Gene detail

Detail information of GWHGAAEX012974/evm.TU.scaffold_48.113

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695025204\|ref\|XP_009399846.1\|	3.27E-42	PREDICTED: rho guanine nucleotide exchange factor 8-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9M811\|ROGFB_ARATH	3.00E-34	Rop guanine nucleotide exchange factor 11
trEMBL	tr\|M0SWB9\|M0SWB9_MUSAM	3.00E-43	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P06900_001}
TAIR	AT1G52240	9.00E-34	RHO guanyl-nucleotide exchange factor 11

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000049	3315716	3325496	-

Transcript Sequence
>GWHTAAEX012974 ATGAGGATTTCCCAGAGTTCCGGGCTTCCCCATTCGGCGGACAACTCTCTTCCCCGACGCCTTCTCAGCTCTCCCCGTTCGCTTGACCCCGCGAAGATCTGCCCCGACTGGTTAGGGCTCGCGTTTGCTCGACTCGCCCGTTCGAAGGCGCTCGCTCACCGTCCTCCCCGTTCGCAGCCGTTCGCTCGACCCTTCCCTGACGCCCGACGCCTGACGCCCGACGCCCGACGCCTTCTCCTCGAGGCTAAGGAGGCTGTGACGCCTGTACTTTTGTGGAGACAACCTCATCCAACTTCAGAAGATGTGATGGTGAATTCATTTGGAATGATGGGCTATCTTGATGATTTCAAGGACAAGAATGAGTTCTGGTATATTAAAAACGATGAAGAAAACTCTGAAAGTGGGAATGCTGACAGAAAAGATGACAAGTGGTGGCTCCCCACAGTGAAAGTTCCTCCAAATGGCCTCTCTGATTTATCCAGAAAATGGCTGCAGTTTCAGAAAGAATGTGTAAACCAGGTTCTGAAGGCAGCCATGGCCATTAATTCCCAAGTTCTGATGGAAATGGAGATCCCCGAAGCTTACATCGACTCTCTTCCAAAGGGCGATCCTCCGAGCGCGCCTCTAGGCGGGAGCGGAGCAGCTGCTGAAGCTCCGACCGGCGCAGCGGCGATGCCCGGCGGGTATTGGTTTTGGAGCGGGCCCAGCGGACCGCCAGGTAGTGGTTGGTGGGGTTGGGGGCCTGGAGGACCGCCCGGCCCAGCCGCCGGTGGATCTGGAGCGGACGGTGAACCAGGCGGGCCGGCAGGTGGGTTCTGGGTTTGGGGAGGGCCGGGAGGGGGCGTCCGTGGAGGCTACGGCGGCGGAAATACGGGAAGCGGAGGAGCGGGCGGGCCGCCGGTATTCTGGGGAGGCCCGGCGGAAGGTGGTGGGCCCGCAGGAGGCGGATGGTGGGGCTGGGCGGGAAACCCTCCGCCACCGCCTCCAACGGCGGAGGGGGGCGGCGGAAGAGGGGGTGATGGAGGGTGGGGATGGTGGGAGGGCCTGGAGGCGGCGGCAGCGGCTGGTGTGGAGGATATGGTGGTGGTGGTGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGATGGTGGGGAGGGAGAGGTGGGAGGGGAGGCGGTGGTGGAGGAGGTTGGGGAGGCTGGGGAGGTCCCGGCGGTGGTTGGGTCGGCGGCGGTGGCGGCGGATCGAGGAAGTAGCGAAGCCAAAACCGTATGGATTCGTCTCTATCTATATAGGATATGTAAAGTATGTGTTTTGGTTAATAAACCTTCTTTCATCGGCTTGTGAGGATGGGTGATGGTTACTTGAAGGTGGGTGTGAATGTTCGATGTAAGGCGTTTAGGTATAATTATATATACTACGATGTGTTTTTCTAAGCGTGTAGTAGAAAGTTTGGTATGGCGTTGTTTATCTGATGAAAATATAGGCTAATCGAGAGCTTCTCTTGGGTTGTTACCTTTGCATTAGAGGTTATATATGTATATATTTAGTAAAGTTTTGTGAATTATTAAAGATTATTCATCAACTGGATTTTGTATATTGGCTTTCAGATTATTGTAAGCCCAGCTTTTTTCAGTTAGAAATGAATTACAAGGCAAAACGCACCAAGACAACTACTTGTATATCCTATGAAACTCACTTTCTCGTATGTCTCAATTTTTATATAAAATAGTGTACTTTGATCTGTCTGATGAAGAAAGAGGCTTAGAAGTCATATTTATGAGGAAGTTAAAGTTTTTGTTAGAGGCCTTAAACTAGGGAAGATCACGAGTGCAGGAAACCAAGCCATCGGCCCCTTTTGAAGAATTGAGGAGCCACTTGCCATATAATTCAAATGACAATCATGAAGCTCTGTGGCCTAAGCTAAATCTTTCCTAACACATCACTTTGAAAGGTGAACATCTTCTAATCAGGGTAGGGTAACCAAATATGGGTAGGCTCAAGATTGAATTTCTTAAGAGATTGACATATGCAAACCATGATAGGCTAACCAAATTATAATTTTCCAAAGAGTGAAAACTCAAATGAATGTGCTAGATCATGCATGCACCTCATCTTGATAGAGCGAAATTGTCAAGGGTGGGAAGGGTCTAGAAGATTGACACAATGTTGGGAGTATTGGATGTGCCAATAATAAAAATTACAAATTACTTACACAAAGACCAGCTAGATAGAAAATAAGAGATTTTAGTAGTACTACTAGAAGATGGAGGGTCAAAAAGAACCACATCACTTACAACAATGGCAGAGAAAGTGACATGCTCAAAGGATCAAGCCATTCCATGCCCAATAAATTAAATATTATGCATTATATGATGACAACACCAAATGCTTTGCCTCAAAAGATTGGCAAGAAAAGAAGATTAATCAATGCAAATATGATTGAGAACACCCAAAAGTTAATGGAATAGTCTCAGAGGGAGCCAAAGAAGCACCAACCGCTGTCAAAACAAAATGCCACTATTTGACAAAGGAAGCAACAAATCCATGCACTTCGCGAGTGATTAAAATAGTAGCATTCAATTGAAGGAGGATTTATTCTTGCATCACAAACTCCAGCTGAAGACAAGGATTCCATAATATTTTATATTCATAGGCAAGGGTGCAATATGCTGACTTTGATATTCGGTCAATCAACACCACTCATGATAAGTCCACATTGTTAGTTTTCATCCGCCATCTCTCTGACTACACACTTTATGGGTGGTGATCGCTCCAAGTGTTGGAGTATAACTTTAAATGCTCTTTAGATCTTTAGCCTATCAATTAATAAAAGTTATTTGAATTATTCAATCTTAATATATTTATTATACCAATGAATTTAAGGGATTAATGCAATGCTTCCAAAGAACATACCTTACTTGAATTAAGGTCTTGAGAGTTCATTTTAGGTTGAGGGTGAAATCTAGAGTTTTGATCAAGCTCTGAAGGGACTAAATGACTTAGATCAGAGCTGAACCAGTGAGTTCATCACCATGAAATTTCTTTGGCGTTTCCTTGCTTATCTCCATGGAAGAGCTCTCCGGTAGGAAGGTAAAGTTCTTTCTTCTTAGATTTAGAAGCTTTACTGATAGTTTCTAAAGCTTAAGGAAACTCTTAGGGTGCTCTTAATGGTCTGAGAGGTTTTGGCAATGGTTGTAAGGCTAAGTTGGAGGGCTCGGGTGAGGTAAGCCAAGAAAAATGAAATGGGAATTACCTTAGTTCCATGTCACCATTTGTTTTAAATTAGATATATACACGATTAGTAGATAATAATGAATATTTTAATCCAATTTGTAAGTTTTGGGGATGGCTAAAATGGCGGTGGATTAACTAAGGGGTGGATTCGACTATTGGAGCTTCAAGGATTGTGATCAATCGAGGAATAAACAACTCAATTTCTCCCATAATGCATTGCGACTCTAATGGATTCAAGGATCATGCGGGTGTGCTTATGTCTTGAGTTGACCCAAGGGATGGCTCAGGCACAACTTAAAGTTTCAATTGAATTTTAGATTCTAGCTTTATGAAGAAAACGTTTTACCCATGCTAAACCTTGGTTCAAATAGTTGGGATATATAGTGTTCATTCAACGCGAAACAAAGCGTGTATATGCTGTGTAAAATCAAATAAAGTAAATATAAATCACGTGCAAACACAATCACAACATAAGACAAGAGATTTACATGACTCAGTGCTAATACAGATGTCTACATGGAGGAAAGCAGAGAATATTTCACTATTGGAGATGGGATTACAATATTTTTAGGATTTAG

Network for GWHGAAEX012974

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03759.12	PRONE	110	202	3.30E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005089	Molecular Function	Rho guanyl-nucleotide exchange factor activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.480
SRP064423	SRR2545915	Juvenile tuber	13.140
SRP108465	SRR5643513	five period of Gastrodia elata	37.810
	SRR5643514	five period of Gastrodia elata	19.800
	SRR5643515	five period of Gastrodia elata	71.220
	SRR5643524	five period of Gastrodia elata	45.460
	SRR5643525	five period of Gastrodia elata	37.050
	SRR5643528	five period of Gastrodia elata	52.550
	SRR5643658	five period of Gastrodia elata	21.800
	SRR5643659	five period of Gastrodia elata	64.960
	SRR5643660	five period of Gastrodia elata	63.900
	SRR5643661	five period of Gastrodia elata	53.070
	SRR5643662	five period of Gastrodia elata	42.030
	SRR5643663	five period of Gastrodia elata	38.980
	SRR5643664	five period of Gastrodia elata	45.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.790
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.730
SRP279888	Gastro	Gastrodia elata tuber	17.20
	Juven	Juvenile tuber	12.79
	Mother_Gastro	Mother tuber of Gastrodia elata	50.77
	Mother_Juven	Mother tuber of Juvenile	69.72