Detail information of GWHGAAEX012975/evm.TU.scaffold_48.114


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16565.00E-109Protein involved in glucose derepression and pre-vacuolar endosome protein sorting
nrgi|659071308|ref|XP_008459153.1|4.29E-121PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Cucumis melo]
Swissprottr|Q9SZE4|VP322_ARATH1.00E-109Vacuolar protein sorting-associated protein 32 homolog 2
trEMBLtr|A0A0A0LHT5|A0A0A0LHT5_CUCSA3.00E-121Uncharacterized protein {ECO:0000313|EMBL:KGN60554.1}
TAIRAT4G291605.00E-109SNF7 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004933257503342506+
Transcript Sequence

Network for GWHGAAEX012975

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03357.20Snf7201873.90E-47
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12194CHMP4, SNF7, VPS32 Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0007034Biological Processvacuolar transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms121.300
SRR2545915Juvenile tuber108.630
SRP108465SRR5643513five period of Gastrodia elata84.500
SRR5643514five period of Gastrodia elata94.370
SRR5643515five period of Gastrodia elata91.590
SRR5643524five period of Gastrodia elata106.250
SRR5643525five period of Gastrodia elata163.600
SRR5643528five period of Gastrodia elata236.020
SRR5643658five period of Gastrodia elata198.080
SRR5643659five period of Gastrodia elata67.070
SRR5643660five period of Gastrodia elata64.680
SRR5643661five period of Gastrodia elata66.820
SRR5643662five period of Gastrodia elata69.920
SRR5643663five period of Gastrodia elata65.530
SRR5643664five period of Gastrodia elata63.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_189.530
SRR6049655Rhizomagastrodiae_C368-T10_good_1102.250
SRR6049656Rhizomagastrodiae_C368-T07_good_1107.140
SRR6049657Rhizomagastrodiae_C368-T07_good_182.890
SRR6049658Rhizomagastrodiae_C368-T04_good_1115.980
SRR6049659Rhizomagastrodiae_C368-T04_good_1109.810
SRR6049660Rhizomagastrodiae_C368-T01_good_196.130
SRR6049661Rhizomagastrodiae_C368-T04_good_199.720
SRR6049662Rhizomagastrodiae_C368-T01_good_1114.260
SRR6049663Rhizomagastrodiae_C368-T01_good_198.390
SRR6049664Rhizomagastrodiae_C368-T10_good_1141.130
SRR6049665Rhizomagastrodiae_C368-T10_good_1141.130
SRP279888GastroGastrodia elata tuber 106.06
JuvenJuvenile tuber72.35
Mother_GastroMother tuber of Gastrodia elata 389.52
Mother_JuvenMother tuber of Juvenile 136.45