Detail information of GWHGAAEX012981/evm.TU.scaffold_48.123
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 3.00E-43 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|743886716|ref|XP_010910213.1| | 0 | PREDICTED: phytosulfokine receptor 1-like [Elaeis guineensis] |
| Swissprot | tr|Q8LPB4|PSKR1_DAUCA | 0 | Phytosulfokine receptor 1 (Precursor) |
| trEMBL | tr|J3LF02|J3LF02_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB02G32190.1} |
| TAIR | AT2G02220 | 0 | phytosulfokin receptor 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 3492459 | 3496528 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012981
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 30 | 67 | 1.10E-07 |
| PF13855.5 | LRR_8 | 315 | 374 | 4.50E-09 |
| PF13855.5 | LRR_8 | 446 | 498 | 1.70E-09 |
| PF13855.5 | LRR_8 | 572 | 631 | 6.20E-08 |
| PF00069.24 | Pkinase | 759 | 1025 | 1.90E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-Xb-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.220 |
| SRR2545915 | Juvenile tuber | 4.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.710 |
| SRR5643514 | five period of Gastrodia elata | 4.890 | |
| SRR5643515 | five period of Gastrodia elata | 9.950 | |
| SRR5643524 | five period of Gastrodia elata | 5.180 | |
| SRR5643525 | five period of Gastrodia elata | 8.720 | |
| SRR5643528 | five period of Gastrodia elata | 13.530 | |
| SRR5643658 | five period of Gastrodia elata | 6.390 | |
| SRR5643659 | five period of Gastrodia elata | 8.340 | |
| SRR5643660 | five period of Gastrodia elata | 5.060 | |
| SRR5643661 | five period of Gastrodia elata | 9.320 | |
| SRR5643662 | five period of Gastrodia elata | 10.120 | |
| SRR5643663 | five period of Gastrodia elata | 7.510 | |
| SRR5643664 | five period of Gastrodia elata | 7.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.030 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.880 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.810 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.210 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.97 |
| Juven | Juvenile tuber | 2.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.35 | |
| Mother_Juven | Mother tuber of Juvenile | 10.72 |