Detail information of GWHGAAEX012984/evm.TU.scaffold_48.127
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|193212461|ref|YP_001998414.1| | 2.00E-30 | glycoside hydrolase 15-like protein [Chlorobaculum parvum NCIB 8327] |
| nr | gi|743775951|ref|XP_010918370.1| | 0 | PREDICTED: uncharacterized protein LOC105042756 [Elaeis guineensis] |
| trEMBL | tr|M0TQ72|M0TQ72_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P13690_001} |
| TAIR | AT3G11920 | 0 | glutaredoxin-related |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 3603476 | 3610495 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012984
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00462.23 | Glutaredoxin | 164 | 221 | 7.50E-11 |
| PF00610.20 | DEP | 285 | 353 | 1.50E-14 |
| PF04784.13 | DUF547 | 433 | 557 | 4.70E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045454 | Biological Process | cell redox homeostasis |
| GO:0035556 | Biological Process | intracellular signal transduction |
| GO:0009055 | Molecular Function | electron carrier activity |
| GO:0015035 | Molecular Function | protein disulfide oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.480 |
| SRR2545915 | Juvenile tuber | 16.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.450 |
| SRR5643514 | five period of Gastrodia elata | 25.470 | |
| SRR5643515 | five period of Gastrodia elata | 33.880 | |
| SRR5643524 | five period of Gastrodia elata | 28.920 | |
| SRR5643525 | five period of Gastrodia elata | 62.290 | |
| SRR5643528 | five period of Gastrodia elata | 96.660 | |
| SRR5643658 | five period of Gastrodia elata | 74.020 | |
| SRR5643659 | five period of Gastrodia elata | 19.550 | |
| SRR5643660 | five period of Gastrodia elata | 13.750 | |
| SRR5643661 | five period of Gastrodia elata | 24.640 | |
| SRR5643662 | five period of Gastrodia elata | 38.470 | |
| SRR5643663 | five period of Gastrodia elata | 20.520 | |
| SRR5643664 | five period of Gastrodia elata | 45.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 40.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 43.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 38.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 27.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 31.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 41.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 50.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 50.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.58 |
| Juven | Juvenile tuber | 11.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 191.39 | |
| Mother_Juven | Mother tuber of Juvenile | 144.67 |