Detail information of GWHGAAEX012986/evm.TU.scaffold_48.130


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|320352940|ref|YP_004194279.1|1.00E-3750S ribosomal protein L17 [Desulfobulbus propionicus DSM 2032]
KOGKOG32807.00E-84Mitochondrial/chloroplast ribosomal protein L17
nrgi|326500438|dbj|BAK06308.1|1.13E-91predicted protein [Hordeum vulgare subsp. vulgare]
Swissprottr|O80363|RK17_TOBAC4.00E-2950S ribosomal protein L17, chloroplastic (Precursor)
trEMBLtr|F2EG36|F2EG36_HORVD4.00E-92Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_62418.1, ECO:0000313|EnsemblPlants:MLOC_62418.2}
TAIRAT5G646507.00E-84Ribosomal protein L17 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004936486963671592+
Transcript Sequence

Network for GWHGAAEX012986

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01196.18Ribosomal_L17171138.50E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02879RP-L17, MRPL17, rplQ Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.130
SRR2545915Juvenile tuber45.230
SRP108465SRR5643513five period of Gastrodia elata46.960
SRR5643514five period of Gastrodia elata46.390
SRR5643515five period of Gastrodia elata46.730
SRR5643524five period of Gastrodia elata43.450
SRR5643525five period of Gastrodia elata29.370
SRR5643528five period of Gastrodia elata33.000
SRR5643658five period of Gastrodia elata28.700
SRR5643659five period of Gastrodia elata48.170
SRR5643660five period of Gastrodia elata42.230
SRR5643661five period of Gastrodia elata47.520
SRR5643662five period of Gastrodia elata41.190
SRR5643663five period of Gastrodia elata46.930
SRR5643664five period of Gastrodia elata36.630
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_143.510
SRR6049655Rhizomagastrodiae_C368-T10_good_142.340
SRR6049656Rhizomagastrodiae_C368-T07_good_142.820
SRR6049657Rhizomagastrodiae_C368-T07_good_140.010
SRR6049658Rhizomagastrodiae_C368-T04_good_129.310
SRR6049659Rhizomagastrodiae_C368-T04_good_130.660
SRR6049660Rhizomagastrodiae_C368-T01_good_135.270
SRR6049661Rhizomagastrodiae_C368-T04_good_131.720
SRR6049662Rhizomagastrodiae_C368-T01_good_138.460
SRR6049663Rhizomagastrodiae_C368-T01_good_137.780
SRR6049664Rhizomagastrodiae_C368-T10_good_142.860
SRR6049665Rhizomagastrodiae_C368-T10_good_142.860
SRP279888GastroGastrodia elata tuber 45.25
JuvenJuvenile tuber46.52
Mother_GastroMother tuber of Gastrodia elata 51.69
Mother_JuvenMother tuber of Juvenile 77.99