Detail information of GWHGAAEX012987/evm.TU.scaffold_48.131
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|18978195|ref|NP_579552.1| | 2.00E-20 | 50S ribosomal protein L23 [Pyrococcus furiosus DSM 3638] |
| KOG | KOG1751 | 2.00E-68 | 60s ribosomal protein L23 |
| nr | gi|567887086|ref|XP_006436065.1| | 8.51E-83 | hypothetical protein CICLE_v10032980mg [Citrus clementina] |
| Swissprot | tr|O22644|RL23A_FRIAG | 3.00E-81 | 60S ribosomal protein L23A |
| trEMBL | tr|A0A067FK20|A0A067FK20_CITSI | 3.00E-83 | Uncharacterized protein {ECO:0000313|EMBL:KDO67734.1} |
| TAIR | AT3G55280 | 2.00E-68 | ribosomal protein L23AB |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 3674857 | 3684155 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012987
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03939.12 | Ribosomal_L23eN | 15 | 67 | 6.00E-16 |
| PF00276.19 | Ribosomal_L23 | 77 | 139 | 7.10E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02893 | RP-L23Ae, RPL23A | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 213.580 |
| SRR2545915 | Juvenile tuber | 275.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 498.550 |
| SRR5643514 | five period of Gastrodia elata | 577.450 | |
| SRR5643515 | five period of Gastrodia elata | 483.040 | |
| SRR5643524 | five period of Gastrodia elata | 544.650 | |
| SRR5643525 | five period of Gastrodia elata | 319.690 | |
| SRR5643528 | five period of Gastrodia elata | 309.000 | |
| SRR5643658 | five period of Gastrodia elata | 231.080 | |
| SRR5643659 | five period of Gastrodia elata | 360.000 | |
| SRR5643660 | five period of Gastrodia elata | 350.200 | |
| SRR5643661 | five period of Gastrodia elata | 388.200 | |
| SRR5643662 | five period of Gastrodia elata | 271.740 | |
| SRR5643663 | five period of Gastrodia elata | 270.810 | |
| SRR5643664 | five period of Gastrodia elata | 246.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 347.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 854.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 462.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 307.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 336.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 275.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 393.010 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 362.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 579.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 514.670 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 639.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 639.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 346.04 |
| Juven | Juvenile tuber | 418.52 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 277.99 | |
| Mother_Juven | Mother tuber of Juvenile | 193.50 |