Detail information of GWHGAAEX012992/evm.TU.scaffold_48.136
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|108761256|ref|YP_634275.1| | 1.00E-73 | oxygen-dependent FAD-linked oxidoreductase [Myxococcus xanthus DK 1622] |
| KOG | KOG1231 | 3.00E-131 | Proteins containing the FAD binding domain |
| nr | gi|694994957|ref|XP_009408161.1| | 0 | PREDICTED: cytokinin dehydrogenase 3-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8LNV6|CKX3_ORYSJ | 0 | Cytokinin dehydrogenase 3 (Precursor) |
| trEMBL | tr|M0RWA6|M0RWA6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P01980_001} |
| TAIR | AT2G41510 | 3.00E-131 | cytokinin oxidase/dehydrogenase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 3826961 | 3840401 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012992
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01565.22 | FAD_binding_4 | 70 | 217 | 1.10E-20 |
| PF09265.9 | Cytokin-bind | 249 | 530 | 7.20E-92 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00279 | CKX | Zeatin biosynthesis | map00908 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0009690 | Biological Process | cytokinin metabolic process |
| GO:0019139 | Molecular Function | cytokinin dehydrogenase activity |
| GO:0071949 | Molecular Function | FAD binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.710 |
| SRR2545915 | Juvenile tuber | 14.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.170 |
| SRR5643514 | five period of Gastrodia elata | 20.000 | |
| SRR5643515 | five period of Gastrodia elata | 7.430 | |
| SRR5643524 | five period of Gastrodia elata | 10.620 | |
| SRR5643525 | five period of Gastrodia elata | 0.470 | |
| SRR5643528 | five period of Gastrodia elata | 0.410 | |
| SRR5643658 | five period of Gastrodia elata | 0.170 | |
| SRR5643659 | five period of Gastrodia elata | 18.710 | |
| SRR5643660 | five period of Gastrodia elata | 18.480 | |
| SRR5643661 | five period of Gastrodia elata | 17.850 | |
| SRR5643662 | five period of Gastrodia elata | 11.660 | |
| SRR5643663 | five period of Gastrodia elata | 12.570 | |
| SRR5643664 | five period of Gastrodia elata | 15.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.560 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 118.980 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 63.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 78.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 41.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 36.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 77.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 66.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 57.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 50.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 48.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 48.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.40 |
| Juven | Juvenile tuber | 267.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.53 | |
| Mother_Juven | Mother tuber of Juvenile | 46.09 |