Gene detail

Detail information of GWHGAAEX012997/evm.TU.scaffold_48.140

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|408672234\|ref\|YP_006871982.1\|	1.00E-06	RNP-1 like RNA-binding protein [Emticicia oligotrophica DSM 17448]
KOG	KOG0117	1.00E-35	Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)
nr	gi\|672184078\|ref\|XP_008812339.1\|	0	PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|O64380\|PABP3_ARATH	9.00E-17	Polyadenylate-binding protein 3
trEMBL	tr\|M0RWJ9\|M0RWJ9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P02910_001}
TAIR	HSM5453806	1.00E-35	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000049	4022249	4046082	+

Transcript Sequence
>GWHTAAEX012997 TTTTTTTTAAAGGAAAAAAAAAGGGACACTTGTCGAAATCGCGAGGGACACGGTTGTTCATTCGATATATAGCCGGCGTTTCTATAAGAGGCTGCCCTCATCACAATAATCAAACCCTACTTGATATTTGCTGCTTTGATTTCGGCCAAAATCTGTTGCTACAGTTCTGCCCCAATCCTGTTTTCTAACGAGATCTTAAGCATGAGGACACGAAACACAGATTCGCCCAAATCTGGTCAGGGGAAGAAGGCGGCGCAAGCCAAGAAGGAGACGCCAGCTGCTGAGAAAGCCCAGGAAGCAGCGCCCAAGCCTTCGCCAAAGTTGACACCCAAAACATCATCGGGGGCGAAGGCAGCTAGGGTTAAGCCATCAACACCCAAAGCTGCCACAACCGCGGAGGCAGACGAGGCCAACGCCCTCGTTACCACTGAGTCAGACGAAATTAAGACTCCTGTCGTGGATTCCGAGAAATCGCTTGAGAAGAAGGTCCGTGTCAAAGCAAAGTCACCGCTGGGTGGGAAGGCAGCCAGCTCTTCCATTACCAATGAGAAGGAAAAATTCGAAGAATCTTCTGCTAAAAGTGAAGGTGAGGAAATCAAGGAAGATGCAGCGGACAATTTGGTGGATCTTGGGAAAGAACAAGAGACTAAAGGGAAGGATGCTAAGAACGATTCAGATAAAGGACCTTCGGAGGCTGTTGTAGAGGTCATACAAGAAGGTGTTACGGCCAAAAAGGATGAGCTTGAAACTAATACAGAAGTAAATAACGAATATGATGTGAATGATGACAATGAGGACCAACAGGTCGAGGATGAAATAGAACAGGATGGTTTAAATGAAGCTGATGAGGACTTTCCATCTGCAGAGGTAGGAGAAGAAGATGCAGGAGAAGGTGTAGAAGGTGTGGGGGATGATGAAGAAAGAACCAAGATAGAAGAGGAAGAACAGGTACAAATTTCTGATATGGCAAAAGCAAGAAAGATTAAAAAGGAATTGGAGATTTTTGTTGGTGGTCTTGATCGGGATGCTGTGGAAGATGATCTGAGGAAGACATTTGAAAAGGTTGGCGAAGTTGTGGAGGTGCGGCTGCACAAAGACTATGCAACGAACAAAAACAAAGGGTTTGCTTTTGTTAAGTTTGCTAGCAAGGAACATGTAGCCCGAGCTCTCGAGGTTATGAAAAATCCTATGATACGCGGAAAGCGCTGTGGCATAGCACCTAGTGAAGATAACGATACTCTCTTTTTGGGGAATATCTGCAATACTTGGACGAAAGATGCAATCAAGCGTAAGCTAAAGGATTATGGCATAGATTCTGTTGAGAATATAACATTAGTTGCGGACACGCAAAATGAAGGCCTGAGTCGGGGGTTTGCTTTTCTTGAATTTTCTTGCCATGTAGATGCTATGGCTGCCTACAAGAGGCTTCAGAAGCCGGATGTGATTTTTGGCCACCCTGAAAGGACAGCAAAAGTAGCCTTTGGCGAGCCACTACGTGAGCCTGACCCTGAAGTTATGGCCCAGGTAAAATCTGTATTTGTAGATGGGCTTCCACCATATTGGGATGAGGACCAAGTGAAGGATCATTTTAAAAGTTTTGGAGAGATTGAAAGGGTTGTTCTGGCTCGGAATATGTCAACTGCCAAACGAAAGGATTTTGGCTTTGTAAACTTTACAAGCCATGAAGCTGCTGTGGCTTGTGTTGAGGGTGTTAATGACACTGAATTGGGTGATGATGGAAAGTCTAAGATGAAAGCTAGAGCTCGACTTGCAAATCCTCTCCCAAAAACTCAGGCTGTTAAGGGTGGAATGAGTGGTGGGTTTCGCATTGGCCATAATGGCATTGGAGTATACTCTAGATTTGGCAGGGGTGTTGGAAGGGGCAGGTTTTCCTCCAACAGGGCTGGGTTTCAGGGTGGCAGAGTTTTTTATTCACATGGTCGTGGCAGGGGAGGGAGGTTCGGAGAAGTGGAAATGTCATATCCTGATTTTTGTGGTTGGAAGCCTTATGGAGTTCGGGGTGGCAGAAGAGGCTCCAGCGCATCTGGAAGGTTTGGTGCTTTTGACAGAGGTCGTGGCAGAGGATTTCCATCTAGAAGGCCAACTTACACCCCTGAAAAGGATTTTAGCGGACATTTTGGAACTGCACAGTATGGTGAAAATCCTTACTATTACGGTGGAGGGCGAGGTCTTAAACGTCCTTTATCCATGATGGAGCATGAACCTAGTTATCTTGAATCTACTAACAGATTACGTCCTCGTTATGATATTCCGGATCCACTCACCGGTGGTTCTCGTTATCGAGATTCTCTTGGGGCTTCTGGGTTATATTCACGCGATTACTTTGGTTCAGATTATGGTGGTAGCTCATATTCATCTTTCTATGGAGGAGAGCCTTCTGGAGGGGGTTATTATTATTAGATGAAATCTGAAGATGAAGAATGCGCTAGCACAAGAAAGAATTTGTTGACTTCTTCAACGTCAAAACAATGAATTTGCTAGCGATTTGTTAACTTCTTCGACGTCAAAACCATGATTGTCATGCTTACCTATATTTAGTATTTTAATTGTCTTGCTATGAATATCCTAGGTGTTAGCTAATCCTAGGTTATTTTCTTTGGAGTTACTTAGGTTTCAAATGAGAGTTTTTGTCTTGAATTGGACATTTAACATTATATGATGAGCTTGGTTGGAATCAGAGCTTTTATATAAAGTATTTGGGCTTGCATATTTGAAGTCAATTGAATATAGGATCACGCATATGCAGTTATGATTCAACATGAGGTGCTTTCTTTATGATGTGTTTTTTGGAAAATGCATAGCAGACAATAACTCTGAGGTTGGATTACTGCTTTAGTTCTAACTTGAACACTTCGAAGACTATGAATATGATGGTCAACATTGCACTGTTATTTTCTTGATTCTTAATTGTGGAATGGTGCATGAAAATAGCATCTAAATTGGTGAAATCATCATCATTTTTATCTGAGGTGCTTCACGGAATGACTATTTAAAATTTATGCACTGTTACTTGATTAGAGGAAAGATATCAATATTTTATCATTATTTGCTTAAGAAGAAAAAATTATGTCTGATATCTTTCATTGGCATTTGAAGCCTTAAAGCCAATGACTCCTATATGCTTGAGAGTAGTAAACCATTGCTGTTACTGGCGGCTTTTGGAAGTTCTTAATTTTTTGAAGACAAGCTTAAAACTTTTTTTTCTGAAAATTTCATTTAACCGGTTGGATGATACTTGTTATTTATTTTAGATTGAAGTTTATGAGGCTTCTTGATGAGAAGTTTTATGTAATGTGGATCTTCTGGTGATAATTTTTATCAATTTAGAATTGACTATTGCTTTGCTATTGTGATATAACATTAGAGCTGGAAGTGCTTTTTGTTGAATGATGTATTTAGGGCTGTTTTTGGATGGAGAAATAAAACTCCTTTTATATTAGGGTACAAATGCTGTACGACGTTTCCTGAAGGCAATTCATTGTTGGGTTCAGCATATAAAGCTCAGGCATTCCCTAAAAAATTTGGTTGATGATTTATTTGGAGTACTGTTTAAATCATGCTATCATTTTGTCAAGATGAGTTCTTAATCCAGCTCAATAACAGTTACTGTATACTGTCTGCCTTTATAGTCTTTGGTTATGGGATTGAAATGCTCTTGCTCCCAACTAGTTAGCATACCAAGATTATGCTTACTGCTACAAGAGTATACATAGTCTTAGTAGTGGTCAACTTGTTTTAATTATTTCATTTTCATTTAATTTTGTTATTTTCGTTATTATTATTTTGTTATTTTCGTTATCATACAAATTGATAGAAGATTGTTGTCTCTTTCTATTATCTTCAAGGTGTGTTTCACATGCTCTCTTCTTCTCTTTGCTTTTATCTTCTCAAGTACAGATGTTCAAGCTTTATAGATGGGCTGTGACTTAGTCTTATTGTGCTCCTGCTTTCATAAACATTGCCGTTGATGATCAATTTGGAATACATATAATTTACTTCATTTTGCTGATTATTTTAATCAAGTTAATTGTCTATGAATTTGGCATGAGAAATGGGGCATTGAAGCAATTACTGTGTCTGCAACATGTCATATCTGGTGGTGTATGTGCAAGTCTTTTTTCTAGATTACCATTTAAGTGCTGGAGGTGTTGAGAAGTGGTCGAAGAACTTAGTGGTCTGCATGCAATCCATGGAGATCTAAAGTTGTGCATTGTAAATCCGCCTTGAACGGTTGCGTCTTCTATGATCGACTGATGTCTTAAAATAAAAGAGATAGATGCCCAAAAATTACCACAATGATTAATTTGCGCTACTGAGGATGATGAATAGCCGGCCCCACCGCGACAAGGCAGAGAGCAACAACCATCAGCAGCTTTTTTATTTATTTATTTGTGGACGAGTTATTATCTTTCTTATTGTTCATCTCTCCTTTTTTCTGTCCCTCTTGCTCTCTCACATTCTCGCATTTGTTCTATTACTTTCTGAATTTTGAGTTCTTTAATCTTGTGATGTGTTTTCTTAAGACAAACCCATTTCTCTTTAAAACAAAAATTATACACACCAACAATATTTCTCATCGTTTTTTTAGTTGCTTTTATTAAATTCAGTTTTCTTTGGTATTTATAATTATTATTCTACTGTCATAACTAAATCA

Network for GWHGAAEX012997

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	267	335	3.30E-18
PF00076.21	RRM_1	347	414	2.80E-07
PF00076.21	RRM_1	445	511	3.60E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	108.170
SRP064423	SRR2545915	Juvenile tuber	123.600
SRP108465	SRR5643513	five period of Gastrodia elata	192.340
	SRR5643514	five period of Gastrodia elata	162.500
	SRR5643515	five period of Gastrodia elata	180.400
	SRR5643524	five period of Gastrodia elata	162.040
	SRR5643525	five period of Gastrodia elata	179.420
	SRR5643528	five period of Gastrodia elata	142.090
	SRR5643658	five period of Gastrodia elata	143.020
	SRR5643659	five period of Gastrodia elata	302.620
	SRR5643660	five period of Gastrodia elata	309.380
	SRR5643661	five period of Gastrodia elata	236.170
	SRR5643662	five period of Gastrodia elata	211.160
	SRR5643663	five period of Gastrodia elata	275.180
	SRR5643664	five period of Gastrodia elata	259.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	274.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	167.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	254.550
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	327.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	365.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	408.790
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	292.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	344.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	214.760
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	274.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	199.090
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	199.090
SRP279888	Gastro	Gastrodia elata tuber	303.58
	Juven	Juvenile tuber	242.00
	Mother_Gastro	Mother tuber of Gastrodia elata	193.06
	Mother_Juven	Mother tuber of Juvenile	179.57