Gene detail

Detail information of GWHGAAEX013002/evm.TU.scaffold_48.146

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|325110152\|ref\|YP_004271220.1\|	8.00E-38	oligopeptide transporter [Planctomyces brasiliensis DSM 5305]
nr	gi\|743863947\|ref\|XP_010943908.1\|	0	PREDICTED: probable metal-nicotianamine transporter YSL12 [Elaeis guineensis]
Swissprot	tr\|Q5JQD7\|YSL12_ORYSJ	0	Probable metal-nicotianamine transporter YSL12
trEMBL	tr\|E3UJZ2\|E3UJZ2_MAIZE	0	Yellow stripe-like transporter 12 {ECO:0000313\|EMBL:ADO20999.1}
TAIR	AT1G65730	0	YELLOW STRIPE like 7

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000049	4189479	4201867	+

Transcript Sequence
>GWHTAAEX013002 ATATGAACTAAAAATAAAATTCTAAATAAAAACATAATCATTTTTTTTTGGAGCATTAATGTTCAAATATCTTTTTTAAATATTTGGGATTTATTTTTCGAAAACCAAAGCGCGTTTCTTACGGCATCTGCGCGTAAAAAACTTATTTTTGTTCATTTGTTATGTACAAATCATCATCAATTCAGCCTATACAAAAAAAAAATTCCCTTAGAGCTCACCATCCATTTCCTACGTCTCTTCCCCTTCTGCGCATCGGCCGAGTTCGCCCGAGAAAATGGAGAATGGTGCTGATGGCGAGAGTCATTCAATTACGGAGCGCGAGGCTGCGGTATCAGATCAAGGCCAGATCACCCATCGGAAAACAAAAACGGAAGCTGCAGCCATGGGCGAAGAGGAGGATGAGATGACTTCGATCGAAAAGGTCTTCGAGGGTAAGAGGATTCCTCCGTGGAGAGAGCAGATTACATTCAGATCTATGGTCGTGAGTTTCTTCCTCTCCGTCATGTTCAGCATCATTGTTATGAAGCTTAATCTCACCACTGGCATCATCCCTTCGCTTAACGTCTCTGCCGGGCTCCTGGGATTCTTCTTCGTCAAGTCATGGACGAAGATACTTGAGAATTTTGGCCTCCTTCAGCATGTCTTCACCCGACAGGAGAATACGGTGATCCAGACCTGCGTTGTCGCCGCTTATGGAATCGCATTTAGCGGAGGCTTTGGAAGCTATCTATTTGCAATGAGCTCAAGGACGGCAAAACAATCAAGCGATGCAAAGACTTCGCAGTACATCAAGGATCCACATTTAGGATGGATGATTGGTTTTCTCTTTCTTGTTAGCTTTATTGGACTCTTTTCACTTGTTCCCCTTCGAAAGATCATGATCATTGACTACAAGTTGATCTACCCAAGCGGCACTGCAACAGCTCACCTTATCAATGGTTTCCACACTCCACAGGGGGCCAAATTAGCTAAGAAGCAAGTGAAGACTCTGGGAAAATTCTTTGTGGGAAGTTTCCTATGGGGATTCTTCCAATGGTTTTACACAGCGGGCGATGACTGTGGGTTTGTCAGCTTCCCAACATTTGGTCTGCAAGCTTATAAAAACAAGTTCTACTTCGATTTTTCAGCTACCTATGTAGGTGTTGGAATGATTTGCCCATACCTTGTCAATATATCCGTTCTCTTAGGCGGAATTATGTCGTGGGGGCTCATGTGGCCTCTTATTGGGAACAAAAAGGGCAGCTGGTACTCAGCGGATCTCCCAGAGTCCAACCTTCACGGTCTGCAGGGCTACAGGGTGTTTATATCGATCGCCATGATTCTGGGGGACGGGCTGTACAACTTCGTGAAGGTTCTGGGCAGGACAGTGCCCGCGATCATCTCCCATGCGCAGGCGAGGAAAGAGAGCAGTAGTGCGCTGCCCGTCTCGGACCATCCAGTGGGAGAAGCGGGTGGGGTATCGTTCGATGACGAGAGGCGGATGGAGGTTTTCCTGAAGGACCAAATCCCGAAGAGAGCTGCGCTGGCAGGGTACGTGGCGATTGCGGCGGTGTCCATCGGGACGATACCTATGGTGTTCCCGCAGCTGAAATGGTACCACGTGCTGGTGGCGTACACGATGGCGCCGGTGCTGGCCTTCTGCAACGCATACGGGTGCGGGTTGACGGATTGGTCGCTGGCATCGACGTACGGGAAGCTGGCCATATTCATGTTCGGGGCGTGGGCGGGGGTGTCGCAGGGCGGGGTGCTTGCCGGGCTGGCGGCGTGCGGGGTCATGATGAACATTGTGTCTACGGCGTCGGACTTGATGCAGGACTTCAAGACGGGGTACCTGACGTTGGCCTCCCCAAGGTCCATGTTCATCAGCCAGGTCATCGGCACGGGGATGGGCTGCGTCATCGCCCCCTGCGTGTTCTGGCTCTTCTACAATGCCTTCCCAGAGCTCGGGATTCCAGGGTCGGAGTACCCAGCGCCCTACGCCCTTGTCTACCGCAATATGGCCATATTGGGGGTGGACGGCTTCGCCTCCCTCCCCGCCCACTGCCTCACGCTCTGCTATGTCTTCTTCGCTGCCGCCGTGGTCATCAACCTGCTCAGGGATCTCGTCGGGAAGCGCTGGGCGGGCTATATCCCGCTCCCCATGGCCATGGCCATCCCCTTCTACCTCGGCCCCTACTTTGCCATTGACATGTGTGCCGGCAGCCTCATCCTCTTCGTCTGGGAGAGGCTCGACAGGCCCAAGGCCGACGCTTTTGCGTCCGCCGTTGCCTCCGGCTTGATTTGTGGGGACGGTATTTGGACGCTCCCGCAGTCTGTGCTCGCACTTGCGAAGATCAAGCCGCCCATTTGCATGAAGTTCGTCGCCAGGAAGATCAACGGTAAGGTCGATACCTTGATCAATACCTTGTCCTAATAATGATGGACGATGGAAAGCTTTATTTGTTTATATTATTGTTAGGTGTAAATTTTTGTCTCATTTTTTGTATTGTGAATCTGAATATATTGAGTGCACTCTAGTTGAAGATTTAATATAAAGTTATTATTTATTTATTGCTTTCTTAATTATTTGATGGAAGTTTTTTTTTTCTATTAGTTGCTGAAATTATTGTCTGAATAAACTCAAAAATCTCTCGTAAGTTCATTATTTTGCTTCTTGTATCAG

Network for GWHGAAEX013002

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03169.14	OPT	62	682	1.40E-154

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.060
SRP064423	SRR2545915	Juvenile tuber	11.090
SRP108465	SRR5643513	five period of Gastrodia elata	20.150
	SRR5643514	five period of Gastrodia elata	14.330
	SRR5643515	five period of Gastrodia elata	28.210
	SRR5643524	five period of Gastrodia elata	16.950
	SRR5643525	five period of Gastrodia elata	50.660
	SRR5643528	five period of Gastrodia elata	46.690
	SRR5643658	five period of Gastrodia elata	32.940
	SRR5643659	five period of Gastrodia elata	14.370
	SRR5643660	five period of Gastrodia elata	10.940
	SRR5643661	five period of Gastrodia elata	14.960
	SRR5643662	five period of Gastrodia elata	17.120
	SRR5643663	five period of Gastrodia elata	16.520
	SRR5643664	five period of Gastrodia elata	22.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.770
SRP279888	Gastro	Gastrodia elata tuber	9.02
	Juven	Juvenile tuber	9.33
	Mother_Gastro	Mother tuber of Gastrodia elata	85.78
	Mother_Juven	Mother tuber of Juvenile	38.36