Gene detail

Detail information of GWHGAAEX013016/evm.TU.scaffold_48.164

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|154706606\|ref\|YP_001424503.1\|	2.00E-06	RNA binding protein [Coxiella burnetii Dugway 5J108-111]
KOG	KOG4197	0	FOG: PPR repeat
nr	gi\|743882239\|ref\|XP_010909108.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q0WMY5\|PP365_ARATH	0	Pentatricopeptide repeat-containing protein At5g04810, chloroplastic (Precursor)
trEMBL	tr\|U5D191\|U5D191_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN16194.1}
TAIR	AT5G04810	0	pentatricopeptide (PPR) repeat-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000049	4692892	4740986	+

Transcript Sequence
>GWHTAAEX013016 CGAACGTGCGGCTAAATTCCAAGTAACGCAAGCACCAGCAATACTCGCGCTTGAGAAGTCCACAGAACTGCGAATGTTCACCTGTTCAGTTAATGGGTGCTATTTCTGTTGCTACTTTCCTTTCACCAAAAAACCTAGGGACTGAGCCTCGTACCTCCCCTTCCTTCCGCTGCTCTTCGAAACAGCCTCCGACTGCATCTCCAGCCGGGCGATACCCCGCCGTAAGCCGACCAAACGCTCCTACCAATGCACAAATCCCTCCTCCTCCTCCGCTGCCTAATCCGTTAGACAGCAAACTCTGGCTCTCCAGCAAGATCCGCCCTCCTCCTCCTCCTCCTCCTCCCCCTTCCCTTCTTCCTCCTACTCCACTTCCTTTGCATTCTTTTTCTCCTCCAGCCAATGCAGCTTTTCCAGAAAGCCCCTCTTGTGGCGGCGCTGACGCTGCGGGGTTATCCAACACGGATTACCGCCAGAAGGGGAAGATCTTTGTGGGGAATCTTCCATTCTGGATTAAGAAGAACGAGGTTGCGGATTTCTTCAGGCAATTCGGGCCGCTGAGGAACGTGGTGCTGATCAGAGGACATGAGGATACCGAGCGGAACGTGGGTTACTGCTTCGTAATCTATGGCGGCCCTACCGCAGAAGAGGCGGCTGAGAAGGCAGCGGAGTTAGATGGCATGGAGTTCCATGGCAGAGTGCTCACTGTAATGCTAGATGATGGGAGCAGGCTTAAGGAAAGAGCGGAGGCCAGGGCTAAATTGGTTGATGGGGAGAAGGTGGAGTTGCGGTCCCAGTGGCATGAAGAGCGGGACGCTGCTTGTCGGAAATTTCGGATGGTTCTAGATACAGAGCCGAAAAATTGGCAGGCTGTGGTTTCTGCATTTGAGAGAATATCGAAGCCTTCAGGAAGAGAGTATGGGCTGATGGTTAACTATTATGCAAGGAGAGGAGACAAGCATCATGCTCGTTCTACTTTTGAGAACATGAGAGCTCGAGGAATAGAGCCAAACTCTTATGTATTTACCAATCTTGTACATGCATATGCAGTTGCCAGAGATATGCGAGGTGCCTTGTCTTGTATTGAAGAAATGAATAGCGAGGGTATAGAGTTAACATTGGTGACATATAGCATACTCATTAGTGGCTATGCCAATATCAAAGATGTCAAATCTGCAGAAAATTTATTTATGGAGGCAAAACAGAAGCTGGAAACACTCAATGCTATCATATATAGCAATATTATCTTTGCTAATTGTCAGACTGACAACATTTCTCGAGCTGAAGATCTAGTGAGAGAGATGGAGGAGCAAGGATTTGACGCACCTATTAGTTTATATCATACTATGATGAATGGTTATACAAATTTTCGGAACGAGGAAAAATGTCTGGTGGTTTTCCAAAGACTCAAGGAATGTGGCTTTGCACTTTCCGTTATCAGCTATGGGTGTCTTATAAATTTGTACGCAAAGATTGGAAAGATGTCAAAAGCCGTAGAAGTATGCAAAGAGATGGAGTCGCATGGGATTAAGCACAACTGCAGGACTTATTCTATGCTGATCAATGGCTACATACAGCTAGATGATTATGCCAATGCTTTCAACATATTCGAGGAGATGATAAAAGCCGGCTTGAAGCCTGATGGCGTGGTTTACAACATTATAATCAACGCATTCTGCAAGATGGGACTCATGGAGCGGGCTATTCGTCTTGTTAATCAAATGAAAAAAGAATGTCTGAGACCTTCATCGCGGACGTTCATGCCCATCATATACGGTTTTGCAACCGCCGGAGATATCAGAAAGGCTCTGGATATTTTTGATCTAATGAGACGACTGGGCGTCATCCCAACCGTTCAAAATTATAATGCTCTTATTCTTGGCCTGGTTCGCAAGCATCAGATGGAGAAGGCGGTTGGAGTGATCGATAAAATGATTCTGGCCGGCATAACTCCTAATGAGCATACTTACACGACAATCATGGAAGGCTATGCAGCTGAAGGAGATACTGGCAAGACTTTCAAGTATTTCACTAAAATTAAGGAGGCTGGCCTGAAGTTCAATGTATTTACCTATGAGTCATTACTCAAGGCATGCTGTAAGTCTGGCCGGATGCAGAGCGCCTTGGCTGTAACCAGGGAAATGAGTACTCAGGGGATTTCTCGGAGTACCTTTGTATATAATATATTAATTGATGGTTGGGCAAGGAGAGGGGACGTCTGGGAGGCTGCTGACTTGATTCAGCAAATGAAACGTGATGGAGTCCTCCCTGACATACACACATTTACTTCTTTCATAAACGCCTGCTGCAGGGCAGGTGATATGCAGAGAGCGACTGAGGTGATTGAAGAAATGAAGTGTGTGGGAATCAAGCCAAATCTCAAAACTTATACGACGCTGATCAAGGGTTGGGCTCGGGCCTCTCTTCCAGAGAAGGCGCTGTTGTGCTTTAAAGAGATGAAGAGGGCTGGGCTGGAGCCTGACAATGCGGCTTACCACTGCTTAATGAGCGCTCTTTTGACGAGGGCGGCCGTGTCCGAGGATAACATCTACAATGAGATTCTGAGTGTTTGCAGAGAGATGGCTAGCCGGGAACTGACCGTCAGCATGGGAACTGCTGCTCGCTGGTCCAAATGCCTGTCAAAGATTGAGAGGGAAGGCGGCGAGCTCACGGAAGCTTTGGAGAAGACCTTCCCTCCTGCCTGGGATTCTTCAAGCCAAAAGTTAGTCTCTACTGCCTCTGATCATTTGAAGAAAGAACATGATGGTTGTGGTGATGACAATGATGATATCTTGTACAGTCAACATTCTTAATTGGGGCATCAAGTTTCTACATGTTTAATGTGCCCAAATCATCTGAAATAATTTTCTCTAAGCTTATTATATTCAATTGAAGCAAGTGTAATCTTCCTATTATTGAGTTCATTTATCATTTTATTCGTTCATTTTCCATAGCATCTCAAGTCTATGCAACACTCAATATATTGACTGCTTTTATTGTTCATGCAATATGATACCTCATAAAAATTTTGGTTTTTAAACGCTACATTTCGCTAAAGGTCAAACTGAATAGTTTGATTTTTGTAGTTTGTTAATTTA

Network for GWHGAAEX013016

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	131	203	1.00E-12
PF13812.5	PPR_3	295	350	1.00E-10
PF01535.19	PPR	379	408	0.016
PF01535.19	PPR	414	443	0.0075
PF13041.5	PPR_2	446	492	3.00E-11
PF12854.6	PPR_1	512	544	3.30E-12
PF01535.19	PPR	558	583	0.0039
PF01535.19	PPR	590	618	0.0024
PF13041.5	PPR_2	620	669	1.90E-11
PF13812.5	PPR_3	714	770	8.60E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.930
SRP064423	SRR2545915	Juvenile tuber	4.950
SRP108465	SRR5643513	five period of Gastrodia elata	5.480
	SRR5643514	five period of Gastrodia elata	5.090
	SRR5643515	five period of Gastrodia elata	4.660
	SRR5643524	five period of Gastrodia elata	4.990
	SRR5643525	five period of Gastrodia elata	6.460
	SRR5643528	five period of Gastrodia elata	6.140
	SRR5643658	five period of Gastrodia elata	6.750
	SRR5643659	five period of Gastrodia elata	6.670
	SRR5643660	five period of Gastrodia elata	6.950
	SRR5643661	five period of Gastrodia elata	6.130
	SRR5643662	five period of Gastrodia elata	5.930
	SRR5643663	five period of Gastrodia elata	6.630
	SRR5643664	five period of Gastrodia elata	6.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.220
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.520
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.020
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.850
SRP279888	Gastro	Gastrodia elata tuber	9.00
	Juven	Juvenile tuber	11.03
	Mother_Gastro	Mother tuber of Gastrodia elata	4.78
	Mother_Juven	Mother tuber of Juvenile	7.21