Gene detail

Detail information of GWHGAAEX013023/evm.TU.scaffold_48.171

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|384208546\|ref\|YP_005594266.1\|	2.00E-07	hypothetical protein Bint_1063 [Brachyspira intermedia PWS/A]
KOG	KOG2084	2.00E-165	Predicted histone tail methylase containing SET domain
nr	gi\|672189363\|ref\|XP_008813823.1\|	0	PREDICTED: SET and MYND domain-containing protein 4 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q84JR9\|TTL4_ARATH	9.00E-10	TPR repeat-containing thioredoxin TTL4
trEMBL	tr\|M0RVT6\|M0RVT6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P00280_001}
TAIR	AT1G33400	2.00E-165	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000049	4786853	4845943	-

Transcript Sequence
>GWHTAAEX013023 GGGCCATGCATGTCCCAGTTCCATGCACAGAAAAACCTGAGAACTATACACGGAATCTAAAATTTTAACAGCGTGTAGTGAAGAAGAAACTGTGACGTAGGAAGAAGAAGCTCATACAGAGAGCGCCCGCCTAACTAAGGAAAAAAACGCAAAAGTAAGCTCTAGAACATATAGCTCTGGTCGTCACCTGCCGGCTGCCGCTCTCGATGGAGCGGCTCAAATCTCTTCTACCGGATAAACTTAAGATGATTATTGCTGAAAGCACTTCAGATAATCTCAACCATGCGTGCTCTACAATTCTGGAGTTCTATCGACATCTTCCCCAATTTCAGAGTGTTATTGGAGAATTAACAGGCGGTGTTGCACTTTGTCGGAAGAGTAAGGAGTCGGCTTTGGGTTGGAAGAGGAAGGGAAATGAATACTTCTCAGAAGGAAACTATTCTGAAGCTTTGAGCTTTTATTCCAAGGTTGTTCCTAAACATGTAGTCTGAATTTGGCCACATCTAGGCATTGTTCAAAATCGGGTCACAACTTAATACCACATCTTATATTCACCGCTTTCGAGTGACTTACTAAAATGAGGGTGAAGGCGATGATCAATGCCTGCGAGGCTGGTTTACTTGGTTCTTTGGAATAGCGCTTTACGATATGTACCAATGGGCATTGATGATATCGATGATAAGTTAGTTGGAATTCTTTTTGCTAATCGGGCATCTGCATTGCATAATATGGGCCTATTTGAAGAATGCATACGGGATTGTGATCGAGCTATTACAATTTACCCTATTTATGCAAAGGCTTGGTACCGAAGAGGGAAAGCAAATTCTTCACTCCAGCAGCATGAAGCTGCGATTCGTGATTTAGAAATTTCCTTGTGCTTGGAAGGTTCTATATCTGGGAAAAATCAGTTAAAGGAAGATATTCAGTTGCTCTTAATCCATCCCACTGCAACAACTGAGACAAGCCGGTCAAATCTGTCAAATAGTACTGAGAAAATACATGATGTTTTAGCTGATATTCAGCTTCGTTGCGTAACAACACCAGATAAAGGCAGAGGAATAGTATCTTCAATTAACATTCCCGCAGCCTCATTAATTCACACAGAGGAACCACTTGCTGCGATTATTACAAAGTCTTTCCGGGAAACACACTGCCATTTTTGCTTCAATGAAGTTCCTGCGGATGCTTTATTCTGCAGCTCATGCACCATACCACTTTACTGCTCTGATAAATGCCTAGAGCAAGCAGTAGGCCGCAAGTTTGTTATGAGCAATTATGTTTCTATTTTGAAAAATAATTTATCAGAAGAACTTTGGAAATATGTTGAAGACTGGTTTCCATTATGTTCTATTGAATGTACAAACATTTGTCACGTGCATGAACACACACATGAATGTGGAGGTTCACACTGGTCTGCTGTTTTACCAGCTGATGTTGTTTTGGCTGGTAGAGTCATGATGAAGACAATTGGAAAGCTAAAAGTTGCTGGAGGATTATCTAAGATTGTCAAAAATTTGGATTTCTCTCACAGTTATAACAAAACATCCCCTGATCTCAAACTGGAGATGCATCTTTATGCCCTTGTGCTGGCTTGTTGCCTACGCCATTATTTTCCATCTCTTGAGAATTCTATTTTCAAGTTAGTTTTACTGATATCCCAGATTAAGGTGAATTCTATTGCAATTGTACATATGAAATCATCAAATTGTTCTGCAATTGGAATTACACTCACTTGTCCTGTTGAGCAGGTTCGAGTCGGCCAAGCCATTTATTCCACTGGAAGCTTATTTAATCACTCATGCCGGCCAAATGTCCATGCTTATTTTCTTTCACGCACGCTTTTCCTACGCTGCACTGAGCTTGTTCCAACAGCATGCCCACTCGAGCTCTCTTATGGCCCACAGCTGGGGGAATTGGATCTTCAGGAAAGGCGAGGAATTCTTGAAGAACAATATTATTTTAAATGCTGTTGCAGGGCATGCTCAGAGCTTAATATGCCTGACCTTGTGATCAATTCTTTTCGGTGTCCTAAGACTAACTGTCTTGGTGCAATCATGGGCGTAGCTTCTTATGAGAAGCTTGAGGATGACTCTCTGCTTATTTATGCAGCATCTCGTTGTTGCAAACTCTCTTTGCCAGTGTTGCAAGAATGTAAGCTTGACATTCTCAAGGTGGCCTATAATTTGCTTGAGAAAAACGAATTACAGAAGTTAGGTTCTGGGAATTGCTTATGTTGCTGCTCTTCTCTTGATTGGACATCATCAGCCTTAGCTTCTAAGTCATTGGCAGATATTGAGAGATTTAAAGACTTGATAGTTTCTTCAGCAGCACAAGAAAACTTAATATCTGTTATCCTGAGATCTCTTGATGATCTTAGATCAGTTAAACATCCGTACAGCAAGGTCGTTGCTCAGGCAGAAGATAAAGTTGCAGAAGCCTTTGCTATGGTTGGTCAGTTTGAACGTGCAAAACAGCATTGTCAAGCATCCCTTGAGATCCTTGGAAAACTCTACGACAGAAAACACATCACTGTTGCTCATGAGATGATAAAGCTAGCTACAATTCATCTGTCTCTAGGCAATCAAGCTGATGCAAAAAGGGATTTAATGCGAGCCGAGAAAATATTTTCACTTTACTACGGCTCTCATGTAGCCAAAATTTTTCCATATATTCATGATTTTAAGAAGATTCTTGATGTCGGATAAAGAGCAACAATAAATGAAATCCTCTTCTCAAGGATCCAAGCGAAGTGGTAATTTTGATATGATGATAGGGATTTGAGTAGTATGATATATATACATATATATCAAATATTAGGGGATTCATTTTTAGGCGTAGCAGTAGGAAATATAACTGATGTGTCTAAATATTGTGTGCTCTTTTTGATGTTATATTTCGTGCATTTTTTTTATGATGCGCACTAGAAGTTGTGGGAGGTGCTCATTCATTTGGGGTTTTGGAAAGATTTTAAAAGCTTTCTCCCTTCTGTCTTAAGCTTTGAACCTGTTATCTTTTAATGGCCAGTTAATTGCTTCAAATCTTTCTCTGGCGATAGCAAAAACCCTGTTTGCTAGGGTGATGCTTACTGCCGAATGGGCAGGTTGTGTGTGGCATAAGCACTGTAAACTCAACAAGGAGATTTCCTTTTTGAGGGTATTGTAACGAAACACTTGATCACATTTTCTTATGCAACTGTTGGAGTATCGTGCTAATTCTGCTGTTTAACGGAATTTGAGACAGCCAATTTTATTTCAAATCATTATTGCCAGAGAACACAGGAAGGAGAGGCTATGAAGGGGACGCCAGCCTCCAGTTGACTATTAGCTAGTTAAGATGCTACGTTGAAACTTTGATGTTTTAGGGATCGCAAGCATTCGGTGAACACTGTTCCTGCAGGTCTTTGATATTTTACATTCATTCCGAAGCAGTTTCACTCATTACGGACTCCTATGCTGTATCTGGTATTTACTCGCTTAAGCTGTAATTAATCTCTTCTTTTTATTGAAAAAAAAAATCATTGAACTCTCTCTTAATCAGAATAAAAT

Network for GWHGAAEX013023

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.070
SRP064423	SRR2545915	Juvenile tuber	11.510
SRP108465	SRR5643513	five period of Gastrodia elata	7.650
	SRR5643514	five period of Gastrodia elata	6.660
	SRR5643515	five period of Gastrodia elata	6.780
	SRR5643524	five period of Gastrodia elata	6.030
	SRR5643525	five period of Gastrodia elata	9.650
	SRR5643528	five period of Gastrodia elata	6.940
	SRR5643658	five period of Gastrodia elata	9.330
	SRR5643659	five period of Gastrodia elata	10.580
	SRR5643660	five period of Gastrodia elata	10.130
	SRR5643661	five period of Gastrodia elata	8.830
	SRR5643662	five period of Gastrodia elata	9.570
	SRR5643663	five period of Gastrodia elata	11.250
	SRR5643664	five period of Gastrodia elata	11.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.290
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.770
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.180
SRP279888	Gastro	Gastrodia elata tuber	14.35
	Juven	Juvenile tuber	9.93
	Mother_Gastro	Mother tuber of Gastrodia elata	6.89
	Mother_Juven	Mother tuber of Juvenile	9.62