Detail information of GWHGAAEX013024/evm.TU.scaffold_48.172


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|57640588|ref|YP_183066.1|1.00E-62signal recognition particle GTPase [Thermococcus kodakarensis KOD1]
KOGKOG07810Signal recognition particle receptor, alpha subunit
nrgi|743881047|ref|XP_010908801.1|0PREDICTED: signal recognition particle receptor subunit alpha-like [Elaeis guineensis]
Swissprottr|P49971|SR541_SOLLC4.00E-33Signal recognition particle 54 kDa protein 1
trEMBLtr|B4F9Q4|B4F9Q4_MAIZE0Uncharacterized protein {ECO:0000313|EMBL:ACF78847.1, ECO:0000313|EnsemblPlants:GRMZM2G060296_P01}
TAIRAT4G306000signal recognition particle receptor alpha subunit family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004948467534858960-
Transcript Sequence

Network for GWHGAAEX013024

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04086.12SRP-alpha_N613409.30E-71
PF02881.18SRP54_N3564222.30E-06
PF00448.21SRP544556593.60E-54
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13431SRPR Protein export map03060

Gene Ontology

GO term OntologyName
GO:0006614Biological ProcessSRP-dependent cotranslational protein targeting to membrane
GO:0006886Biological Processintracellular protein transport
GO:0005047Molecular Functionsignal recognition particle binding
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
GO:0005785Cellular Componentsignal recognition particle receptor complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms136.240
SRR2545915Juvenile tuber131.770
SRP108465SRR5643513five period of Gastrodia elata143.110
SRR5643514five period of Gastrodia elata135.080
SRR5643515five period of Gastrodia elata143.720
SRR5643524five period of Gastrodia elata152.800
SRR5643525five period of Gastrodia elata178.780
SRR5643528five period of Gastrodia elata145.860
SRR5643658five period of Gastrodia elata157.390
SRR5643659five period of Gastrodia elata123.050
SRR5643660five period of Gastrodia elata125.810
SRR5643661five period of Gastrodia elata119.430
SRR5643662five period of Gastrodia elata113.890
SRR5643663five period of Gastrodia elata109.760
SRR5643664five period of Gastrodia elata116.890
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1136.190
SRR6049655Rhizomagastrodiae_C368-T10_good_199.150
SRR6049656Rhizomagastrodiae_C368-T07_good_1147.810
SRR6049657Rhizomagastrodiae_C368-T07_good_1147.770
SRR6049658Rhizomagastrodiae_C368-T04_good_1146.400
SRR6049659Rhizomagastrodiae_C368-T04_good_1167.050
SRR6049660Rhizomagastrodiae_C368-T01_good_1164.210
SRR6049661Rhizomagastrodiae_C368-T04_good_1142.130
SRR6049662Rhizomagastrodiae_C368-T01_good_1121.070
SRR6049663Rhizomagastrodiae_C368-T01_good_1136.840
SRR6049664Rhizomagastrodiae_C368-T10_good_1152.320
SRR6049665Rhizomagastrodiae_C368-T10_good_1152.320
SRP279888GastroGastrodia elata tuber 108.14
JuvenJuvenile tuber188.35
Mother_GastroMother tuber of Gastrodia elata 208.94
Mother_JuvenMother tuber of Juvenile 185.06