Detail information of GWHGAAEX013025/evm.TU.scaffold_48.173
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|375007853|ref|YP_004981486.1| | 0 | Copper-exporting P-type ATPase A [Geobacillus thermoleovorans CCB_US3_UF5] |
| KOG | KOG0207 | 0 | Cation transport ATPase |
| nr | gi|672128001|ref|XP_008787478.1| | 0 | PREDICTED: probable copper-transporting ATPase HMA5 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9SH30|HMA5_ARATH | 0 | Probable copper-transporting ATPase HMA5 |
| trEMBL | tr|M5WZ60|M5WZ60_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ12105.1} |
| TAIR | AT1G63440 | 0 | heavy metal atpase 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 4896267 | 4909859 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013025
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00403.25 | HMA | 32 | 92 | 2.40E-14 |
| PF00403.25 | HMA | 110 | 170 | 9.30E-10 |
| PF00403.25 | HMA | 197 | 243 | 9.90E-05 |
| PF00122.19 | E1-E2_ATPase | 431 | 610 | 3.70E-46 |
| PF00702.25 | Hydrolase | 628 | 850 | 2.30E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K17686 | copA, ctpA, ATP7 | MAPK signaling pathway - plant | map04016 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006812 | Biological Process | cation transport |
| GO:0030001 | Biological Process | metal ion transport |
| GO:0005507 | Molecular Function | copper ion binding |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0019829 | Molecular Function | cation-transporting ATPase activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 37.360 |
| SRR2545915 | Juvenile tuber | 10.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.890 |
| SRR5643514 | five period of Gastrodia elata | 28.430 | |
| SRR5643515 | five period of Gastrodia elata | 20.030 | |
| SRR5643524 | five period of Gastrodia elata | 22.850 | |
| SRR5643525 | five period of Gastrodia elata | 23.320 | |
| SRR5643528 | five period of Gastrodia elata | 24.350 | |
| SRR5643658 | five period of Gastrodia elata | 24.600 | |
| SRR5643659 | five period of Gastrodia elata | 2.750 | |
| SRR5643660 | five period of Gastrodia elata | 3.690 | |
| SRR5643661 | five period of Gastrodia elata | 4.140 | |
| SRR5643662 | five period of Gastrodia elata | 5.420 | |
| SRR5643663 | five period of Gastrodia elata | 4.630 | |
| SRR5643664 | five period of Gastrodia elata | 8.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.630 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 24.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 31.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.560 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.78 |
| Juven | Juvenile tuber | 6.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.42 | |
| Mother_Juven | Mother tuber of Juvenile | 8.68 |