Detail information of GWHGAAEX013026/evm.TU.scaffold_48.174
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672128163|ref|XP_008787561.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Phoenix dactylifera] |
| Swissprot | tr|Q9FLZ9|PP405_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g39350 |
| trEMBL | tr|A5AFF8|A5AFF8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN68962.1} |
| TAIR | AT5G39350 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 4924600 | 4926591 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013026
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 180 | 227 | 8.90E-09 |
| PF01535.19 | PPR | 255 | 276 | 0.097 |
| PF13041.5 | PPR_2 | 281 | 328 | 4.70E-08 |
| PF01535.19 | PPR | 357 | 378 | 0.38 |
| PF01535.19 | PPR | 385 | 413 | 4.50E-06 |
| PF01535.19 | PPR | 457 | 478 | 0.069 |
| PF13041.5 | PPR_2 | 482 | 529 | 1.40E-12 |
| PF01535.19 | PPR | 560 | 581 | 0.41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.160 |
| SRR2545915 | Juvenile tuber | 3.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.340 |
| SRR5643514 | five period of Gastrodia elata | 4.810 | |
| SRR5643515 | five period of Gastrodia elata | 5.390 | |
| SRR5643524 | five period of Gastrodia elata | 3.680 | |
| SRR5643525 | five period of Gastrodia elata | 7.590 | |
| SRR5643528 | five period of Gastrodia elata | 9.260 | |
| SRR5643658 | five period of Gastrodia elata | 19.580 | |
| SRR5643659 | five period of Gastrodia elata | 3.370 | |
| SRR5643660 | five period of Gastrodia elata | 3.880 | |
| SRR5643661 | five period of Gastrodia elata | 2.800 | |
| SRR5643662 | five period of Gastrodia elata | 2.880 | |
| SRR5643663 | five period of Gastrodia elata | 3.050 | |
| SRR5643664 | five period of Gastrodia elata | 3.010 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.990 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.49 |
| Juven | Juvenile tuber | 7.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 35.50 | |
| Mother_Juven | Mother tuber of Juvenile | 15.57 |