Detail information of GWHGAAEX013027/evm.TU.scaffold_48.175
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|110637140|ref|YP_677347.1| | 2.00E-63 | proline dehydrogenase [Cytophaga hutchinsonii ATCC 33406] |
| KOG | KOG0186 | 5.00E-159 | Proline oxidase |
| nr | gi|672190770|ref|XP_008775336.1| | 0 | PREDICTED: proline dehydrogenase 1, mitochondrial-like [Phoenix dactylifera] |
| Swissprot | tr|Q6NKX1|PROD2_ARATH | 1.00E-159 | Proline dehydrogenase 2, mitochondrial (Precursor) |
| trEMBL | tr|M0T093|M0T093_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P20640_001} |
| TAIR | AT5G38710 | 5.00E-159 | Methylenetetrahydrofolate reductase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 4927748 | 4931300 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013027
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01619.17 | Pro_dh | 117 | 455 | 9.50E-71 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00318 | PRODH, fadM, putB | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of antibiotics | map01130 | ||
| Arginine and proline metabolism | map00330 |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 29.790 |
| SRR2545915 | Juvenile tuber | 6.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.920 |
| SRR5643514 | five period of Gastrodia elata | 21.700 | |
| SRR5643515 | five period of Gastrodia elata | 21.150 | |
| SRR5643524 | five period of Gastrodia elata | 15.370 | |
| SRR5643525 | five period of Gastrodia elata | 198.630 | |
| SRR5643528 | five period of Gastrodia elata | 185.110 | |
| SRR5643658 | five period of Gastrodia elata | 469.030 | |
| SRR5643659 | five period of Gastrodia elata | 6.560 | |
| SRR5643660 | five period of Gastrodia elata | 8.890 | |
| SRR5643661 | five period of Gastrodia elata | 7.660 | |
| SRR5643662 | five period of Gastrodia elata | 9.880 | |
| SRR5643663 | five period of Gastrodia elata | 10.000 | |
| SRR5643664 | five period of Gastrodia elata | 13.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.600 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 79.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 81.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 122.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 78.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.21 |
| Juven | Juvenile tuber | 22.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 147.21 | |
| Mother_Juven | Mother tuber of Juvenile | 38.40 |