Detail information of GWHGAAEX013028/evm.TU.scaffold_48.176
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|374287509|ref|YP_005034594.1| | 4.00E-56 | glutathione peroxidase [Bacteriovorax marinus SJ] |
| KOG | KOG1651 | 1.00E-97 | Glutathione peroxidase |
| nr | gi|595848524|ref|XP_007209545.1| | 5.66E-104 | hypothetical protein PRUPE_ppa010771mg [Prunus persica] |
| Swissprot | tr|O23814|GPX4_SPIOL | 3.00E-101 | Probable phospholipid hydroperoxide glutathione peroxidase |
| trEMBL | tr|M5WAJ5|M5WAJ5_PRUPE | 2.00E-104 | Glutathione peroxidase {ECO:0000256|RuleBase:RU000499} |
| TAIR | AT4G11600 | 1.00E-97 | glutathione peroxidase 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 4933297 | 4943262 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013028
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00255.18 | GSHPx | 69 | 177 | 6.00E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00432 | gpx, btuE, bsaA | Metabolic pathways | map01100 |
| Arachidonic acid metabolism | map00590 | ||
| Glutathione metabolism | map00480 | ||
| Thyroid hormone synthesis | map04918 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006979 | Biological Process | response to oxidative stress |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0004602 | Molecular Function | glutathione peroxidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 224.790 |
| SRR2545915 | Juvenile tuber | 270.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 195.160 |
| SRR5643514 | five period of Gastrodia elata | 277.430 | |
| SRR5643515 | five period of Gastrodia elata | 227.280 | |
| SRR5643524 | five period of Gastrodia elata | 263.680 | |
| SRR5643525 | five period of Gastrodia elata | 990.820 | |
| SRR5643528 | five period of Gastrodia elata | 878.900 | |
| SRR5643658 | five period of Gastrodia elata | 1008.140 | |
| SRR5643659 | five period of Gastrodia elata | 114.510 | |
| SRR5643660 | five period of Gastrodia elata | 124.210 | |
| SRR5643661 | five period of Gastrodia elata | 124.340 | |
| SRR5643662 | five period of Gastrodia elata | 124.570 | |
| SRR5643663 | five period of Gastrodia elata | 149.420 | |
| SRR5643664 | five period of Gastrodia elata | 128.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 159.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 88.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 166.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 138.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 133.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 145.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 120.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 135.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 151.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 128.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 199.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 199.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 190.64 |
| Juven | Juvenile tuber | 143.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 284.17 | |
| Mother_Juven | Mother tuber of Juvenile | 189.42 |