Detail information of GWHGAAEX013032/evm.TU.scaffold_48.180
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|470182683|ref|YP_007568558.1| | 5.00E-64 | Amine oxidase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] |
| KOG | KOG0029 | 0 | Amine oxidase |
| nr | gi|743776429|ref|XP_010918622.1| | 0 | PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Elaeis guineensis] |
| Swissprot | tr|Q01H90|LDL3_ORYSI | 0 | Lysine-specific histone demethylase 1 homolog 3 |
| trEMBL | tr|I1PNU0|I1PNU0_ORYGL | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA04G0185900.1} |
| TAIR | AT3G10390 | 0 | Flavin containing amine oxidoreductase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 4981528 | 4995175 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013032
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04433.16 | SWIRM | 132 | 200 | 4.80E-11 |
| PF01593.23 | Amino_oxidase | 226 | 650 | 3.50E-93 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SWI/SNF-SWI3 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11450 | KDM1A, AOF2, LSD1 | Thermogenesis | map04714 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.580 |
| SRR2545915 | Juvenile tuber | 8.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.400 |
| SRR5643514 | five period of Gastrodia elata | 7.670 | |
| SRR5643515 | five period of Gastrodia elata | 6.610 | |
| SRR5643524 | five period of Gastrodia elata | 6.870 | |
| SRR5643525 | five period of Gastrodia elata | 10.190 | |
| SRR5643528 | five period of Gastrodia elata | 6.660 | |
| SRR5643658 | five period of Gastrodia elata | 10.860 | |
| SRR5643659 | five period of Gastrodia elata | 10.160 | |
| SRR5643660 | five period of Gastrodia elata | 9.830 | |
| SRR5643661 | five period of Gastrodia elata | 9.650 | |
| SRR5643662 | five period of Gastrodia elata | 10.790 | |
| SRR5643663 | five period of Gastrodia elata | 9.640 | |
| SRR5643664 | five period of Gastrodia elata | 10.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.130 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.30 |
| Juven | Juvenile tuber | 15.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.78 | |
| Mother_Juven | Mother tuber of Juvenile | 9.18 |