Detail information of GWHGAAEX013036/evm.TU.scaffold_48.184


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41978.00E-131FOG: PPR repeat
nrgi|743833320|ref|XP_010935235.1|1.35E-176PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g17670 [Elaeis guineensis]
Swissprottr|Q84J71|PP161_ARATH2.00E-131Pentatricopeptide repeat-containing protein At2g17670
trEMBLtr|M0S0W8|M0S0W8_MUSAM7.00E-171Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P18100_001}
TAIRAT2G176708.00E-131Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004951355625147015-
Transcript Sequence

Network for GWHGAAEX013036

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.5PPR_22472953.70E-08
PF12854.6PPR_13143451.40E-11
PF13041.5PPR_23524011.80E-15
PF12854.6PPR_14194482.30E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.840
SRR2545915Juvenile tuber11.840
SRP108465SRR5643513five period of Gastrodia elata16.850
SRR5643514five period of Gastrodia elata14.910
SRR5643515five period of Gastrodia elata15.750
SRR5643524five period of Gastrodia elata13.700
SRR5643525five period of Gastrodia elata16.580
SRR5643528five period of Gastrodia elata11.800
SRR5643658five period of Gastrodia elata13.490
SRR5643659five period of Gastrodia elata21.010
SRR5643660five period of Gastrodia elata21.540
SRR5643661five period of Gastrodia elata19.610
SRR5643662five period of Gastrodia elata22.270
SRR5643663five period of Gastrodia elata20.980
SRR5643664five period of Gastrodia elata22.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.840
SRR6049655Rhizomagastrodiae_C368-T10_good_118.160
SRR6049656Rhizomagastrodiae_C368-T07_good_111.470
SRR6049657Rhizomagastrodiae_C368-T07_good_115.160
SRR6049658Rhizomagastrodiae_C368-T04_good_111.880
SRR6049659Rhizomagastrodiae_C368-T04_good_19.900
SRR6049660Rhizomagastrodiae_C368-T01_good_114.490
SRR6049661Rhizomagastrodiae_C368-T04_good_18.700
SRR6049662Rhizomagastrodiae_C368-T01_good_110.920
SRR6049663Rhizomagastrodiae_C368-T01_good_110.530
SRR6049664Rhizomagastrodiae_C368-T10_good_111.740
SRR6049665Rhizomagastrodiae_C368-T10_good_111.740
SRP279888GastroGastrodia elata tuber 9.53
JuvenJuvenile tuber25.13
Mother_GastroMother tuber of Gastrodia elata 12.45
Mother_JuvenMother tuber of Juvenile 14.97