Detail information of GWHGAAEX013037/evm.TU.scaffold_48.185


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG00100Ubiquitin-like protein
nrgi|720083409|ref|XP_010242888.1|0PREDICTED: ubiquitin domain-containing protein DSK2a-like isoform X1 [Nelumbo nucifera]
Swissprottr|Q9SII8|DSK2B_ARATH0Ubiquitin domain-containing protein DSK2b
trEMBLtr|B9S6T7|B9S6T7_RICCO0Plant ubiquilin, putative {ECO:0000313|EMBL:EEF40693.1}
TAIRAT2G172000ubiquitin family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004951509205173944-
Transcript Sequence

Network for GWHGAAEX013037

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00240.22ubiquitin22891.60E-18
PF00627.30UBA5015373.30E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04523UBQLN, DSK2 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms117.590
SRR2545915Juvenile tuber132.850
SRP108465SRR5643513five period of Gastrodia elata95.290
SRR5643514five period of Gastrodia elata85.210
SRR5643515five period of Gastrodia elata93.440
SRR5643524five period of Gastrodia elata85.070
SRR5643525five period of Gastrodia elata167.430
SRR5643528five period of Gastrodia elata178.100
SRR5643658five period of Gastrodia elata152.380
SRR5643659five period of Gastrodia elata107.490
SRR5643660five period of Gastrodia elata112.970
SRR5643661five period of Gastrodia elata108.330
SRR5643662five period of Gastrodia elata129.340
SRR5643663five period of Gastrodia elata127.160
SRR5643664five period of Gastrodia elata122.680
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_193.290
SRR6049655Rhizomagastrodiae_C368-T10_good_1138.120
SRR6049656Rhizomagastrodiae_C368-T07_good_194.930
SRR6049657Rhizomagastrodiae_C368-T07_good_195.210
SRR6049658Rhizomagastrodiae_C368-T04_good_182.490
SRR6049659Rhizomagastrodiae_C368-T04_good_186.800
SRR6049660Rhizomagastrodiae_C368-T01_good_183.470
SRR6049661Rhizomagastrodiae_C368-T04_good_184.630
SRR6049662Rhizomagastrodiae_C368-T01_good_192.990
SRR6049663Rhizomagastrodiae_C368-T01_good_182.690
SRR6049664Rhizomagastrodiae_C368-T10_good_1102.130
SRR6049665Rhizomagastrodiae_C368-T10_good_1102.130
SRP279888GastroGastrodia elata tuber 95.08
JuvenJuvenile tuber161.12
Mother_GastroMother tuber of Gastrodia elata 94.78
Mother_JuvenMother tuber of Juvenile 133.86