Detail information of GWHGAAEX013038/evm.TU.scaffold_48.187
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 7.00E-134 | FOG: PPR repeat |
| nr | gi|672132426|ref|XP_008789796.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Phoenix dactylifera] |
| Swissprot | tr|Q9SUD8|PP340_ARATH | 2.00E-134 | Pentatricopeptide repeat-containing protein At4g28010 |
| trEMBL | tr|W1NDK2|W1NDK2_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERM93672.1} |
| trEMBL | tr|W1NDK2|W1NDK2_AMBTC | 4.00E-84 | Uncharacterized protein {ECO:0000313|EMBL:ERM93672.1} |
| TAIR | AT4G28010 | 7.00E-134 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 5177415 | 5192691 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013038
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 43 | 72 | 0.92 |
| PF13041.5 | PPR_2 | 112 | 156 | 1.30E-10 |
| PF13041.5 | PPR_2 | 179 | 228 | 4.20E-17 |
| PF13041.5 | PPR_2 | 249 | 298 | 1.70E-12 |
| PF13041.5 | PPR_2 | 319 | 368 | 6.50E-16 |
| PF13041.5 | PPR_2 | 391 | 440 | 1.10E-15 |
| PF12854.6 | PPR_1 | 457 | 490 | 2.80E-09 |
| PF01535.19 | PPR | 501 | 527 | 0.02 |
| PF01535.19 | PPR | 533 | 562 | 0.04 |
| PF13041.5 | PPR_2 | 565 | 612 | 2.40E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.180 |
| SRR2545915 | Juvenile tuber | 9.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.580 |
| SRR5643514 | five period of Gastrodia elata | 8.090 | |
| SRR5643515 | five period of Gastrodia elata | 6.930 | |
| SRR5643524 | five period of Gastrodia elata | 7.580 | |
| SRR5643525 | five period of Gastrodia elata | 7.150 | |
| SRR5643528 | five period of Gastrodia elata | 4.230 | |
| SRR5643658 | five period of Gastrodia elata | 7.340 | |
| SRR5643659 | five period of Gastrodia elata | 7.770 | |
| SRR5643660 | five period of Gastrodia elata | 6.860 | |
| SRR5643661 | five period of Gastrodia elata | 7.720 | |
| SRR5643662 | five period of Gastrodia elata | 7.420 | |
| SRR5643663 | five period of Gastrodia elata | 8.450 | |
| SRR5643664 | five period of Gastrodia elata | 8.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.35 |
| Juven | Juvenile tuber | 6.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.78 | |
| Mother_Juven | Mother tuber of Juvenile | 4.24 |