Gene detail

Detail information of GWHGAAEX013042/evm.TU.scaffold_48.192

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0048	4.00E-74	Transcription factor, Myb superfamily
nr	gi\|695026274\|ref\|XP_009400425.1\|	1.48E-80	PREDICTED: transcription factor RAX2-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9SJL7\|RAX2_ARATH	2.00E-72	Transcription factor RAX2
trEMBL	tr\|M0SXE8\|M0SXE8_MUSAM	6.00E-81	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P10690_001}
TAIR	AT5G57620	4.00E-74	myb domain protein 36

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000049	5331108	5333855	+

Transcript Sequence
>GWHTAAEX013042 CATGGACTCACTTGATCTTTTCATGAGGACGGAGACGCAGAGAGAGAGAGAGAGTTGATGGAAACCAGTCGGAGGCAAACCGGATCGTCATCATCTTCTTCTTCTTCTTTCTCCTCCTTATTTTTTTTCTTATAAGTGGAAACAAGGGATGGGAAGGGCTCCTTGTTGTGACAAGGCAAACGTGAAGAAAGGCCCTTGGTCTCCTGAAGAAGACTCCAAACTCAAACAATTCATTGAGAAATATGGCACTGGTGGCAACTGGATCGCTCTTCCTCACAAAGCTGGGCTGAAGAGGTGTGGAAAAAGCTGCAGGCTCAGATGGCTAAACTATCTTAGGCCAAACATCAAGCACGGGGAGTTTTCTGATGCCGAAGATAGGACTATTTGCACCCTCTTTGCTACCATAGGCAGCAGGTGGTCTATCATAGCTTCTCATCTTCCAGGCAGAACAGATAATGATATCAAGAATTACTGGAACACAAAATTGAAAAAGAAACTACTTGGCATCAGTTGCTCACAAAAAAGGCAACAAAATCAGCAGCATCTTATCTTCTCATCACCATCATCACCTTTTATGCTTTCCAATCCCTTCAATACCAATGCTAGCGGTGCTAATACCCCTCCCATTCAAAAACCCTTTCTCTATGGCTTCAACAATCACAAAGCAAATTTTGTTCCAATATCGCCAGAAGCATACAGTTCTTCCTCAACACCCTCTTCTTCTTCATCCACTGTTTTAATGTTTAGCACTGGGGAAGCATCAGAACAAGGAAGCCAATATATGAGCTTTAATAGTCTTCTGCATTATGGGAGCTCTGGATTTGAGGAACTTAGTGGATTGCAGAACTCTGCTCCATTAGAGGAGTGCTCAAGCTATGGATTTGAAGAGATTAAGCAGATGCTTATGAATGGCAGCAATGAGTTCATGTTTTAGTTTTGGGAAAAGGAGAATTGTTTGGTGAGCATAATTTATGATTTTATATATATAAAACTCGATATTTTGTTTTGTATTATTTTGTATTGATGTTAATACAACATCAATACAGGATAATACAGAATAATGATGAATATTGGTATATAGAATCATGATTTCTGCTCACTTTTTATTTTAGATTTTTTTTTCTTGGTGTGATAATCTTGCTAGTGATTAGTATCGAAGATTATTAATAAAAATTTGAAGATAGTCATATATCATTTTGAAAATTGTCTTAATATTAAATTTTAGTTTCGTTTTTTTCATAAAGTTCTGATCAATAGCAACTTTAGACAAAATTTCATCTTTCAAAAAAATGATTAAATTTTAATCATATAATTTGATAAAATGTGATTAAATTTTGAATCATATCACTTCTAGCCATCTATTATACTGATATAGTTGGCTAAAATATTAAAAGCATGTCGAAAAAGTTGTTTTTGATCATGATTGCTGAAGAAGTGTAAGCTAAAACTATTGTTCAAGATATATTTGCTAAAATGATATATGAAATATTTGCCAAATTTTTAAGCTGTCAGTTTGGTTTCACCTTCTTGACTTCTTCTGTTGTTGTTTGAAAGTCAGTGTTGATATTTGTGTTTAATGTTCTAATCTTTGAATTGTACTGTTTCTCTCTCTCGCATCAACAGTACTGTCGTCAGAGCTCGACAGAAAATAATAAGAAAAAAACAAAGGCCTTGTCTCATATTGGAAGTGGCAAACTGCTATAGTCTTTTCTCAGAGAATGCTATTCAACCAGTAATCAGTATCAAAAGAGCAAATCTTCTTTAATTTCGTTTCTTTCAATTTTTGTAGTGC

Network for GWHGAAEX013042

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	14	62	3.10E-15
PF00249.30	Myb_DNA-binding	69	111	8.90E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.020
SRP064423	SRR2545915	Juvenile tuber	40.690
SRP108465	SRR5643513	five period of Gastrodia elata	15.970
	SRR5643514	five period of Gastrodia elata	14.150
	SRR5643515	five period of Gastrodia elata	13.770
	SRR5643524	five period of Gastrodia elata	15.290
	SRR5643525	five period of Gastrodia elata	0.390
	SRR5643528	five period of Gastrodia elata	1.300
	SRR5643658	five period of Gastrodia elata	0.470
	SRR5643659	five period of Gastrodia elata	12.120
	SRR5643660	five period of Gastrodia elata	15.890
	SRR5643661	five period of Gastrodia elata	16.680
	SRR5643662	five period of Gastrodia elata	11.700
	SRR5643663	five period of Gastrodia elata	7.690
	SRR5643664	five period of Gastrodia elata	9.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.580
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.140
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	21.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.650
SRP279888	Gastro	Gastrodia elata tuber	23.23
	Juven	Juvenile tuber	27.77
	Mother_Gastro	Mother tuber of Gastrodia elata	35.66
	Mother_Juven	Mother tuber of Juvenile	17.72