Gene detail

Detail information of GWHGAAEX013043/evm.TU.scaffold_48.194

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|159041032\|ref\|YP_001540284.1\|	3.00E-129	DNA-directed RNA polymerase subunit B [Caldivirga maquilingensis IC-167]
KOG	KOG0216	0	RNA polymerase I, second largest subunit
nr	gi\|695052069\|ref\|XP_009414083.1\|	0	PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q42877\|RPB2_SOLLC	3.00E-114	DNA-directed RNA polymerase II subunit RPB2
trEMBL	tr\|M0TSV1\|M0TSV1_MUSAM	0	DNA-directed RNA polymerase {ECO:0000256\|RuleBase:RU000431}
TAIR	AT1G29940	0	nuclear RNA polymerase A2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000049	5419533	5483569	+

Transcript Sequence
>GWHTAAEX013043 GTCGGCGGCAAATAAGCTATTTCCGATTTTTGACTCCCGGAACATATCGAACCCTCCCGCTCGACTCTCTCACGCACGGAAGACGACTGCGCAGCAGCCGACGGGAGCGCTTCTTGCAGCAGGCGAGCAGGCGACGGCGACTCAGTCCCTTGCATCCAACGACGAAAGCCAACAGAAGTGCGGCCGACGTCTCAGCACGCACGCACTACTCTCCTCGCTCGACCTTCTTCTCCTTCCGCTCGATCTTCTGCGCTCGACAGGTGATTCTTTCTCCCGATCCCAGCCGCTAATCCTTCTAAGGCTCCGCTATTTTTCCTTCCCGTGAATTCAAGGTCTTATTTCAGGATCTTGCTTCTGATGGGTTTAATGAAGAATGGAACCTACGCATCTCTTCATGAGCTTGTCAAGCACCATATAGAATCATATAATTACTTTATTGATGAAGGCCTTGAGAAGGTTCTCATGTCAGTCAGACCTATTCATATTGTGGACCCAATCACAGGGTCCAATTTAAAGATATTTTTTGAAAAGCCCTACTTGCATCCTCCAATGAGGGATGGGCTCATGAATGAACCTATCTTTCCTAGCGAGTGCAGGCAATCAATGACAACTTATCGCGGCTCTTTCAAAATCGTTGTTTGCTTCCAGTATGATGGAGGGGCCATTATAAGAGAGAAAATTAGCTTTGGATATCTGCCAATTATGTTAATGTCAAAGCTTTGTCATTTAAGAGGATCTGATTCACGGAAATTAGTTTGCCACAAAGAGGAAGCAAGTGAAGTGGGTGGGTACTTCATTTGTAATGGGCTGGAGCGAGTTTGTCGGCTTTTGATGGTTCAAAAGCGTAATCATCCATTAAGTTTGGTTCGACCGAGTTTTCGTAAACGGGGAGATGGTTTCAGTGACAAAGCTGCAATCGTAAGGTGTGTTCGTGCAGATCTATCAGCTGTTATTCTCACGTTGTATTACTTTAAAAATGGAAGTGCCAGAGTTGGCTTTCGGATATCTGGGATGGAGTACTTTCTTCCAGTTGGACTTGTTTTGAAGGCTCTCATTGAGACTAGTGATCATGAAATATATGTGAGCTTAACCTGTTGCTATAATGAAAAATACCAAACGGAGAAAGGTGCTGTTGGCACTCAACTCATTGGGGAAAGGGCTCAAATAATTCTGGATGAGCTAAGGAGTTTATCTCTCATGACCCGCAACCAGTGTCTTAAACACATTGGAATTCACTTCAGACCTGCCTTATCTGAATTTAATACTGAAAGTGATACTTTTATTGGTGAAGCTGTTCTGAGAGACTACATTTTGGTGCATCTCAATAACAACCATGAAAAGTTTAATTTATTTATATTTATGCTGCAGAAACTCTTTGCACTTGTCGATCAGACAGCCACTCCTGATAATGTGGATGCTCTGCAAAATATGGAGGTTCTTCTTATTGGGCATCTTATGACTATTTATGTTAAGGAAAAGCTAGAAGATTGGTTGGAGAAGGCAAAGTTGCATATCACTGATGAGATTAAAAAAAAAGAAACTGATTTTGACTTTAAAGATTTACGGCTTATAAAGAAAATCACCAGCCGCAATGCGTCATTGGTTGGCAGATCTATTGAGAGCATAATCCAAACTGGACGGTTGGCCACATCAATTGGCATTAGTTTGCCTCAGCGAGATGGATTCACAGTTCAGGCAGAGAGGCTCAACTTTGTTCGTTTTATTTCACATTTTCGTTCTGTTCACAGAGGCGCTTCTTTTCAGCAACAAAGAATAACATATGTTCGCAAATTACTTCCAGAGTCTTGGGGTTTCCTTTGTCCTGTTCACACGCCTGATGGGGTTCCTTGTGGTTTATTGAATCACATGACAGCTACGTGTAGAGTTTCATCTTTCTATGACCTAAAAGGGCAAGTAAAGGATTTCCTTCAAATCCGATTGTCCGTTCTTTCTGTCTTGATTGGTTTTGGAATGACTTCTTCAATGCCAAGGATTGAGCGTGCTGGTCCTCCTGACGTGCTTCATGTTTTATTAGATGGTTGTGTTGTAGGTTCCATTCCTTCTGGCAAAGTAGAGAAAGCAGTATTGCACTTACGGAGCTTGAAAGTTACTTTATCTTATGGGATTCCCGATGATTTGGAGGTGGGCTATGTGCCTGTAAGTGAGGGCGGAGCCTACCCTGGATTATATCTTTTTACCTCTCCTTCTAGACTGATTCGACCAGTCAGAAATATTTCCTACATCTCTGAACGAAATGACAATATTGAGTTTATAGGGCCATTTGAACAAGCTTTCATGGAGATTAGCTGCCCTGATGGTGGGAATGGGGGAAGAAGAGAAAACTTTCCTGCAACCCATGAGGAGATTCATCCAACTACAATACTTAGTGTTGTTGCAAATCTTACTCCCTGGTCTGATCATAATCAAAGTCCTCGTAATATGTACCAGTGCCAGATGGCAAAGCAGTCAATGGGATTTTCAGGTCAAGCTTTACAGTACCGTGCAGATGTGAAGACATATCATCTGCAGACACCACAATCACCGATTGTGCGGACATATTCATACAACAAATTTTGCATGGATGAGTTCCCTATTGGAACAAATGCAATAGTTGCAGTTTTGTCATACACTGGCTATGATATGGAGGATGCGATGATCTTGAATAAATCTGCTGTTGAACGGGGGCTTTTTCGTGGGCATGTCTACCAAACTGATACTATTGACTTATCAAAGAAAAAGACAGAAAAAGCTTTAGAAATCTTTTCAAGAGGACTCGATGTTTCCAAATCCTCAATTGACTCGGATGGACTTCCCTTTGTTGGACAGACTATTCATCCAAATGAGCCAAAGTGCTGCATTTATAAAACATTATCCGGTTCATCTTCAACACACAAATTAAAGGGATCGGAACCCATGATTGTTGATTATGTTTCTATTGATGGTACTTGTACGAAGAATTATATTCAAAAGGTCAATATTCGTGGCCGCCGTGTTAGGATTCCAGTGATTGGTGACAAGTTTAGTAGCAGGCATGGTCAGAAAGGTGTTTGCTCTCAGTTATGGCCAGACGTTGATATGCCATTTTCTTCAATCACAGGAATGCGACCTGATCTCATCATTAATCCACATGCATTTCCTTCTCGCATGACTATTGGAATGCTTCTAGAGTCCATTGCAGCAAAGGGTGGAAGTCTAAAAGGAAAATTTGTTGATGCAACACCATTCTCGAGTTCTGTTCAGGAGAAGGATTCTGAAAAAAGCTCTTTGATTGATGAAATTGGTCCAATATTGGCCTCCCACGGATTCAACTATCATGGTGTTGAGGTTCTCTACAGTGGCGTTCTTGGTACAGAAATGACCTGTGAAATTTTTATGGGGCCTGTTTATTACCAAAGGCTTCGGCATATGGTATCTGATAAGTTCCAGGTTCGATCAACTGGCCCTGTGGATCAGATCACTCGACAGCCGATTGGTGGGAGGAAGCGGGGAGGCGGCATTCGTTTCGGGGAGATGGAGCGCGATTCCATCCTAGCTCACGGGGCTGCTTATCTTCTGCATGACCGTCTACATTCATGCTCGGATTATCACATTGCGGATGTCTGCTCCGATTGCGGGAGCCTGCTCACGGCAACCGTTATTGATCCCCCGCAGAGGAGGTTGATGAAGGACATCAAAAACAACCTTCGCCCACACAGATCCGTTACCCCGAATAATGCGAAGGTCGTGTGCCACTCTTGCAAATCGGGCAAGGCATTGGAGACTGTTGCGATGCCTTATGTATTCAAATACTTGGCCGCTGAGCTGGCTGCGATGAATATAAAGTTGGATTTGCATTTAAGCAACAAGTCCAGAGCAAAATCATAAATCTTGATTCTCTTCAGCATATTTATTCTTTAGTAGGTAGCAGCATGTTGTTGTGGAAGAGGAGTTTGTAGTATTGAAAAACACCTTAGACTAATTTAAGGGGATTTTTTTATAATCATTTATATGTATAAGTTACATTGTAGCTTTTAAAACATTTTGAGTATAATTTTCTTATTTTTGGTGACGTGATCCATCGCCTATACAAAACTGGTAAAACCATATATACCTTACATTGTTGAAATTAATATATACAAAATTGTTCAGAAT

Network for GWHGAAEX013043

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04563.14	RNA_pol_Rpb2_1	14	409	1.00E-32
PF04561.13	RNA_pol_Rpb2_2	182	360	2.90E-09
PF04565.15	RNA_pol_Rpb2_3	447	510	2.50E-26
PF06883.11	RNA_pol_Rpa2_4	564	621	1.80E-18
PF00562.27	RNA_pol_Rpb2_6	679	1043	1.30E-108
PF04560.19	RNA_pol_Rpb2_7	1045	1159	8.50E-22

Protein Sequence

>GWHPAAEX013043
MGLMKNGTYASLHELVKHHIESYNYFIDEGLEKVLMSVRPIHIVDPITGSNLKIFFEKPYLHPPMRDGLMNEPIFPSECRQSMTTYRGSFKIVVCFQYDGGAIIREKISFGYLPIMLMSKLCHLRGSDSRKLVCHKEEASEVGGYFICNGLERVCRLLMVQKRNHPLSLVRPSFRKRGDGFSDKAAIVRCVRADLSAVILTLYYFKNGSARVGFRISGMEYFLPVGLVLKALIETSDHEIYVSLTCCYNEKYQTEKGAVGTQLIGERAQIILDELRSLSLMTRNQCLKHIGIHFRPALSEFNTESDTFIGEAVLRDYILVHLNNNHEKFNLFIFMLQKLFALVDQTATPDNVDALQNMEVLLIGHLMTIYVKEKLEDWLEKAKLHITDEIKKKETDFDFKDLRLIKKITSRNASLVGRSIESIIQTGRLATSIGISLPQRDGFTVQAERLNFVRFISHFRSVHRGASFQQQRITYVRKLLPESWGFLCPVHTPDGVPCGLLNHMTATCRVSSFYDLKGQVKDFLQIRLSVLSVLIGFGMTSSMPRIERAGPPDVLHVLLDGCVVGSIPSGKVEKAVLHLRSLKVTLSYGIPDDLEVGYVPVSEGGAYPGLYLFTSPSRLIRPVRNISYISERNDNIEFIGPFEQAFMEISCPDGGNGGRRENFPATHEEIHPTTILSVVANLTPWSDHNQSPRNMYQCQMAKQSMGFSGQALQYRADVKTYHLQTPQSPIVRTYSYNKFCMDEFPIGTNAIVAVLSYTGYDMEDAMILNKSAVERGLFRGHVYQTDTIDLSKKKTEKALEIFSRGLDVSKSSIDSDGLPFVGQTIHPNEPKCCIYKTLSGSSSTHKLKGSEPMIVDYVSIDGTCTKNYIQKVNIRGRRVRIPVIGDKFSSRHGQKGVCSQLWPDVDMPFSSITGMRPDLIINPHAFPSRMTIGMLLESIAAKGGSLKGKFVDATPFSSSVQEKDSEKSSLIDEIGPILASHGFNYHGVEVLYSGVLGTEMTCEIFMGPVYYQRLRHMVSDKFQVRSTGPVDQITRQPIGGRKRGGGIRFGEMERDSILAHGAAYLLHDRLHSCSDYHIADVCSDCGSLLTATVIDPPQRRLMKDIKNNLRPHRSVTPNNAKVVCHSCKSGKALETVAMPYVFKYLAAELAAMNIKLDLHLSNKSRAKS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03002	RPA2, POLR1B	RNA polymerase	map03020

Gene Ontology

GO term	Ontology	Name
GO:0006351	Biological Process	transcription, DNA-templated
GO:0003899	Molecular Function	DNA-directed RNA polymerase activity
GO:0032549	Molecular Function	ribonucleoside binding
GO:0003677	Molecular Function	DNA binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.230
SRP064423	SRR2545915	Juvenile tuber	25.050
SRP108465	SRR5643513	five period of Gastrodia elata	18.130
	SRR5643514	five period of Gastrodia elata	18.160
	SRR5643515	five period of Gastrodia elata	18.430
	SRR5643524	five period of Gastrodia elata	17.440
	SRR5643525	five period of Gastrodia elata	12.270
	SRR5643528	five period of Gastrodia elata	10.340
	SRR5643658	five period of Gastrodia elata	11.910
	SRR5643659	five period of Gastrodia elata	26.830
	SRR5643660	five period of Gastrodia elata	29.390
	SRR5643661	five period of Gastrodia elata	26.090
	SRR5643662	five period of Gastrodia elata	23.720
	SRR5643663	five period of Gastrodia elata	26.420
	SRR5643664	five period of Gastrodia elata	26.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.820
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.870
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.110
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.340
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.620
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.630
SRP279888	Gastro	Gastrodia elata tuber	43.16
	Juven	Juvenile tuber	26.59
	Mother_Gastro	Mother tuber of Gastrodia elata	32.57
	Mother_Juven	Mother tuber of Juvenile	32.84