Detail information of GWHGAAEX013044/evm.TU.scaffold_48.195
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284035241|ref|YP_003385171.1| | 2.00E-131 | alpha-L-fucosidase [Spirosoma linguale DSM 74] |
| KOG | KOG3340 | 2.00E-73 | Alpha-L-fucosidase |
| nr | gi|695074717|ref|XP_009384574.1| | 0 | PREDICTED: putative alpha-L-fucosidase 1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8GW72|FUCO1_ARATH | 0 | Alpha-L-fucosidase 1 (Precursor) |
| trEMBL | tr|M0RUD6|M0RUD6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P22060_001} |
| TAIR | AT2G28100 | 2.00E-73 | alpha-L-fucosidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000049 | 5486070 | 5489557 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013044
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01120.16 | Alpha_L_fucos | 90 | 351 | 1.30E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH29 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01206 | FUCA | Other glycan degradation | map00511 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004560 | Molecular Function | alpha-L-fucosidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.550 |
| SRR2545915 | Juvenile tuber | 7.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.280 |
| SRR5643514 | five period of Gastrodia elata | 8.860 | |
| SRR5643515 | five period of Gastrodia elata | 8.200 | |
| SRR5643524 | five period of Gastrodia elata | 10.650 | |
| SRR5643525 | five period of Gastrodia elata | 6.880 | |
| SRR5643528 | five period of Gastrodia elata | 5.560 | |
| SRR5643658 | five period of Gastrodia elata | 5.990 | |
| SRR5643659 | five period of Gastrodia elata | 10.250 | |
| SRR5643660 | five period of Gastrodia elata | 10.520 | |
| SRR5643661 | five period of Gastrodia elata | 10.110 | |
| SRR5643662 | five period of Gastrodia elata | 10.230 | |
| SRR5643663 | five period of Gastrodia elata | 9.070 | |
| SRR5643664 | five period of Gastrodia elata | 9.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.170 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.50 |
| Juven | Juvenile tuber | 15.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.14 | |
| Mother_Juven | Mother tuber of Juvenile | 9.53 |