Gene detail

Detail information of GWHGAAEX013046/evm.TU.scaffold_48.198

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|71277763\|ref\|YP_270010.1\|	1.00E-84	serine protease [Colwellia psychrerythraea 34H]
nr	gi\|672171338\|ref\|XP_008805738.1\|	0	PREDICTED: subtilisin-like protease SDD1 [Phoenix dactylifera]
Swissprot	tr\|O64495\|SDD1_ARATH	7.00E-157	Subtilisin-like protease SDD1 {ECO:0000303\|PubMed:10809670} (Precursor)
trEMBL	tr\|C5YPI9\|C5YPI9_SORBI	0	Putative uncharacterized protein Sb08g017490 {ECO:0000313\|EMBL:EES16124.1}
TAIR	AT1G04110	2.00E-156	Subtilase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000049	5520267	5523139	-

Transcript Sequence
>GWHTAAEX013046 AAAAGAGAGCCATGCAGACAGCAGTCATCTTAATAGTTTTTCTCTTCGTAGGCATTTTCCCTGACAGCTTGAGCTGCCGCCAAACTTACATAGTCCATGTCCTCAAACCCAATGGCAAAGCCGACTATCTCTCGGCAGACGACCGCCTTAGCCACCACCTATCCTTCCTCCCCTCTCCTGCAGAACTCATTTACTCCTACTCCGATGCCATCAACGGTTTTGCGGCACGCCTAAGCCCAGAAGATGTCGAAGCCATGAAATCCAAAGATGGCTTCCTCCTTGCCATTCCGGACAGTGTCGTCAAACATCACACCACCTACACCCCTTCCTTCATAGGGCTGAATTCCAACTCCGGCCCTTGGCCAGGCTCCAACTTTGGCGAGGGAATAATCATCGGTCTCATCGACACTGGAATCGACCCAACCCACCTCTCATTCTCCGACTTTGATGAAGCAATGCCGCCTCCACCACCAAAATGGGGAGGAAGCTGCGGCTTCTCTTGTCCCAAGGCTTGCAACAACAAGCTCATTGGTGCTATTACCTTCTTGAATGGCTCTCACCCCACCCCAATGGACGACATTGGCCACGGCACCCACACCTCGAGCACGGCTGCCGGCGCTGCTGTCTCGGCCGCCAGCGTGCTTGGGCAGGCCCTTGGCGTTGTCGCCACCGGGGTTGCTCCGGGGGCCCACCTTTCCATGTACAGAGTGCTCGCCAACGGCTCCGGCTTAACCTCTGACGTCATTGCTGGTATTGACAGGGCCATCAGGGACAATGTGGACGTGCTTTCGATGTCCCTCGCGGAATCTTTTCCTCACCCGGTATATAAAGACTCAATCTCAACTTCCTCTTTTGCAGCCATAAGGAAAGGAATCGTTCCCTGCGCCTCTGCAGGCAATAGCGGACCGGGGGCCGGATCAATAAGCAATGATGCCCCATGGTTGCTGACTGTTGGCGCTGCGACGACAGACAGAAGGATAGCTGCGAGTCTCTTGCTTGGCGATGGGAATGCACTCATCGGAGAGTCAGGGTACCAGCTCAGCAAGGCTATACCTTTCAAGAGAATGGTGAATCCAGGAGGCAATGCGAATTGCACCAAGTCAGAGCTAGCGAAGGTGCACGTCAATGACATGATTCTTCTCTGTTCTTACATAGTAGCAAGCGTTGCTGATTTGAAGAACGCTGGCGTCGCTGCCATTGTGTTGCTTGGCCCAAAGCTTAGTGGCCTTGCAACGTTTGCGGACGTGAGTGTGCTACCTGTACTGTATCTCAACTACCAAAATGTTGAAATCTTGCTCTCATACATAACTGCATCGAATGACTCAGCCCTCGCAGCAATTGAATTCAATGGAACGCAATTTGGCGCTCCAAACTCTCCTTCGGTGGCATCGTTTTCATCGCGGGGTCCTAGTAACTTTAACGGTGGGATTTTAAAACCGGATGTGATAGGTCCTGGGGTTAACGTTATGGCCGCATGGCCGAATGGGATTGGGCCAAACCCAGCATCCGTTCCGTCCAATAAAAACTTCAATTTTTTGAGCGGAACATCCATGTCAGCGCCACACATATCCGGGGTTACGGCGATCATCAAGAAGCTGCACCCAAATTGGTCTGCGGCAGCTGTGAAGTCTGCGATCATGACTACTGCCTATGCAACTTATGCGGATGGGTCTCCAATTGCTGATCAGTACCCGAGCGACGGTCCTACGGCGTCAGTCTTTGCAATAGGGGCCGGGCATGTTGACGCTCGCAAGGCAGCATATCCAGGACTGGTTTATGATGCTGGCGTGAATGATTATGTGGCTTATATGTGTGGGCTGGGATACACAGATGAACAGGTTAGTGCGGTAACACAGAGGGCCGTAAAGTGTGCATCCGTGAAGAGTATTCCGGCAGAACAGCTGAACTACCCGTCAGTATCCCTCACTCTTCAAGTTGGCTCAGAGAAGAAGAAGAGTGTGACAAGGATAGTGACGAATGTGGGAGAAGCCGAGTCAGTTTATCAGTTAAAGTACAATACTCCAAAGGAGGTGGAACTAATTGTTACTCCGTCTGAGTTAGCGTTCACGAAGGTGGGGGAGAAGAAGAGCTTTGTAATGGAGTTCAGTATTGGCGCCGGAGCAAAGCCGAGGAAAGGAGAAGTTGCAGAAGGAGACCTGCGGTGGGTGAAGGGAGATGTCACCGTTAGGAGCCCTTTTGTCGTCAACTTTGCATAAAATTAATGATTTGAACTTAAGGCAAGCAAAAAGAGGAATGCAATATCCTTGTGTGCTGATAAAATGTTGGAATGAGACTAATATCGAATGTGCAATCTTTTAATGTGTGTAGTGATTCTTTTTTTTATCAATATCAAAAAGGGGAAGAAATTATAAGAAAATGC

Network for GWHGAAEX013046

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05922.15	Inhibitor_I9	25	99	6.70E-08
PF00082.21	Peptidase_S8	123	575	1.30E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0004252	Molecular Function	serine-type endopeptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.030
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	13.370
	SRR5643514	five period of Gastrodia elata	6.580
	SRR5643515	five period of Gastrodia elata	7.200
	SRR5643524	five period of Gastrodia elata	3.970
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.070
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.000
	SRR5643660	five period of Gastrodia elata	0.030
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	58.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	82.440
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.400
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	77.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.650
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	108.450
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	108.450
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	0.01
	Mother_Gastro	Mother tuber of Gastrodia elata	0.97
	Mother_Juven	Mother tuber of Juvenile	0.08