Detail information of GWHGAAEX013054/evm.TU.scaffold_49.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 6.00E-79 | FOG: PPR repeat |
| nr | gi|743759193|ref|XP_010930804.1| | 1.15E-171 | PREDICTED: pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like [Elaeis guineensis] |
| Swissprot | tr|Q9LQ14|PPR96_ARATH | 1.00E-79 | Pentatricopeptide repeat-containing protein At1g62930, chloroplastic (Precursor) |
| trEMBL | tr|M0SG48|M0SG48_MUSAM | 5.00E-107 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P19820_001} |
| trEMBL | tr|M0SG48|M0SG48_MUSAM | 3.00E-47 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P19820_001} |
| TAIR | AT1G62930 | 6.00E-79 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000046 | 655063 | 656751 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013054
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 112 | 160 | 1.90E-14 |
| PF13812.5 | PPR_3 | 206 | 266 | 8.20E-06 |
| PF13041.5 | PPR_2 | 289 | 337 | 4.80E-12 |
| PF12854.6 | PPR_1 | 355 | 387 | 4.10E-07 |
| PF13041.5 | PPR_2 | 393 | 438 | 7.40E-11 |
| PF12854.6 | PPR_1 | 494 | 525 | 4.20E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.240 |
| SRR2545915 | Juvenile tuber | 2.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.390 |
| SRR5643514 | five period of Gastrodia elata | 3.490 | |
| SRR5643515 | five period of Gastrodia elata | 3.470 | |
| SRR5643524 | five period of Gastrodia elata | 3.050 | |
| SRR5643525 | five period of Gastrodia elata | 1.240 | |
| SRR5643528 | five period of Gastrodia elata | 0.870 | |
| SRR5643658 | five period of Gastrodia elata | 0.510 | |
| SRR5643659 | five period of Gastrodia elata | 4.650 | |
| SRR5643660 | five period of Gastrodia elata | 4.850 | |
| SRR5643661 | five period of Gastrodia elata | 4.720 | |
| SRR5643662 | five period of Gastrodia elata | 5.050 | |
| SRR5643663 | five period of Gastrodia elata | 4.360 | |
| SRR5643664 | five period of Gastrodia elata | 4.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.970 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.77 |
| Juven | Juvenile tuber | 3.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.80 | |
| Mother_Juven | Mother tuber of Juvenile | 1.65 |