Detail information of GWHGAAEX013058/evm.TU.scaffold_49.22
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|320162142|ref|YP_004175367.1| | 0 | valyl-tRNA synthetase [Anaerolinea thermophila UNI-1] |
| KOG | KOG0432 | 0 | Valyl-tRNA synthetase |
| nr | gi|695022451|ref|XP_009398353.1| | 0 | PREDICTED: valine--tRNA ligase, mitochondrial [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P93736|SYV_ARATH | 0 | Valine--tRNA ligase |
| trEMBL | tr|D7TF60|D7TF60_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI29095.3} |
| TAIR | AT5G16710_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000046 | 1461911 | 1574242 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013058
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00133.21 | tRNA-synt_1 | 124 | 682 | 1.30E-191 |
| PF08264.12 | Anticodon_1 | 738 | 881 | 4.80E-36 |
| PF10458.8 | Val_tRNA-synt_C | 946 | 1009 | 3.30E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01873 | VARS, valS | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006438 | Biological Process | valyl-tRNA aminoacylation |
| GO:0006418 | Biological Process | tRNA aminoacylation for protein translation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity |
| GO:0004832 | Molecular Function | valine-tRNA ligase activity |
| GO:0002161 | Molecular Function | aminoacyl-tRNA editing activity |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.730 |
| SRR2545915 | Juvenile tuber | 27.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.750 |
| SRR5643514 | five period of Gastrodia elata | 19.250 | |
| SRR5643515 | five period of Gastrodia elata | 17.820 | |
| SRR5643524 | five period of Gastrodia elata | 18.110 | |
| SRR5643525 | five period of Gastrodia elata | 11.010 | |
| SRR5643528 | five period of Gastrodia elata | 11.430 | |
| SRR5643658 | five period of Gastrodia elata | 15.590 | |
| SRR5643659 | five period of Gastrodia elata | 19.040 | |
| SRR5643660 | five period of Gastrodia elata | 16.840 | |
| SRR5643661 | five period of Gastrodia elata | 15.810 | |
| SRR5643662 | five period of Gastrodia elata | 11.330 | |
| SRR5643663 | five period of Gastrodia elata | 15.530 | |
| SRR5643664 | five period of Gastrodia elata | 12.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.710 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.100 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.04 |
| Juven | Juvenile tuber | 13.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.79 | |
| Mother_Juven | Mother tuber of Juvenile | 9.50 |