Detail information of GWHGAAEX013065/evm.TU.scaffold_49.34


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672186763|ref|XP_008813168.1|1.44E-121PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Phoenix dactylifera]
Swissprottr|Q9STF9|PP266_ARATH9.00E-101Pentatricopeptide repeat-containing protein At3g46870
trEMBLtr|A0A059D530|A0A059D530_EUCGR1.00E-112Uncharacterized protein {ECO:0000313|EMBL:KCW85496.1}
TAIRAT3G468703.00E-100Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004621576772168571-
Transcript Sequence

Network for GWHGAAEX013065

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.5PPR_23463941.30E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms46.700
SRR2545915Juvenile tuber40.570
SRP108465SRR5643513five period of Gastrodia elata9.070
SRR5643514five period of Gastrodia elata8.410
SRR5643515five period of Gastrodia elata7.950
SRR5643524five period of Gastrodia elata6.660
SRR5643525five period of Gastrodia elata7.310
SRR5643528five period of Gastrodia elata5.590
SRR5643658five period of Gastrodia elata5.960
SRR5643659five period of Gastrodia elata23.740
SRR5643660five period of Gastrodia elata28.540
SRR5643661five period of Gastrodia elata24.450
SRR5643662five period of Gastrodia elata30.440
SRR5643663five period of Gastrodia elata29.220
SRR5643664five period of Gastrodia elata36.560
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.920
SRR6049655Rhizomagastrodiae_C368-T10_good_110.950
SRR6049656Rhizomagastrodiae_C368-T07_good_115.130
SRR6049657Rhizomagastrodiae_C368-T07_good_125.160
SRR6049658Rhizomagastrodiae_C368-T04_good_119.970
SRR6049659Rhizomagastrodiae_C368-T04_good_126.300
SRR6049660Rhizomagastrodiae_C368-T01_good_120.410
SRR6049661Rhizomagastrodiae_C368-T04_good_119.290
SRR6049662Rhizomagastrodiae_C368-T01_good_114.550
SRR6049663Rhizomagastrodiae_C368-T01_good_115.970
SRR6049664Rhizomagastrodiae_C368-T10_good_112.530
SRR6049665Rhizomagastrodiae_C368-T10_good_112.530
SRP279888GastroGastrodia elata tuber 19.88
JuvenJuvenile tuber13.43
Mother_GastroMother tuber of Gastrodia elata 4.01
Mother_JuvenMother tuber of Juvenile 7.39