Detail information of GWHGAAEX013086/evm.TU.scaffold_49.76
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392396951|ref|YP_006433552.1| | 4.00E-55 | protoheme IX farnesyltransferase [Flexibacter litoralis DSM 6794] |
| KOG | KOG1380 | 3.00E-152 | Heme A farnesyltransferase |
| nr | gi|743778796|ref|XP_010919862.1| | 0 | PREDICTED: protoheme IX farnesyltransferase, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|O64886|COX10_ARATH | 1.00E-154 | Protoheme IX farnesyltransferase, mitochondrial (Precursor) |
| trEMBL | tr|M0RT55|M0RT55_MUSAM | 4.00E-175 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P17750_001} |
| TAIR | AT2G44520 | 3.00E-152 | cytochrome c oxidase 10 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000046 | 5596171 | 5622405 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013086
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01040.17 | UbiA | 156 | 404 | 3.90E-47 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0048034 | Biological Process | heme O biosynthetic process |
| GO:0016765 | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| GO:0008495 | Molecular Function | protoheme IX farnesyltransferase activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.490 |
| SRR2545915 | Juvenile tuber | 12.720 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.700 |
| SRR5643514 | five period of Gastrodia elata | 33.750 | |
| SRR5643515 | five period of Gastrodia elata | 26.490 | |
| SRR5643524 | five period of Gastrodia elata | 30.430 | |
| SRR5643525 | five period of Gastrodia elata | 49.620 | |
| SRR5643528 | five period of Gastrodia elata | 44.360 | |
| SRR5643658 | five period of Gastrodia elata | 38.880 | |
| SRR5643659 | five period of Gastrodia elata | 23.910 | |
| SRR5643660 | five period of Gastrodia elata | 27.040 | |
| SRR5643661 | five period of Gastrodia elata | 26.910 | |
| SRR5643662 | five period of Gastrodia elata | 28.220 | |
| SRR5643663 | five period of Gastrodia elata | 34.180 | |
| SRR5643664 | five period of Gastrodia elata | 31.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.010 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 32.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 32.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.19 |
| Juven | Juvenile tuber | 29.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.02 | |
| Mother_Juven | Mother tuber of Juvenile | 43.09 |