Detail information of GWHGAAEX013088/evm.TU.scaffold_5.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2190 | 2.00E-90 | PolyC-binding proteins alphaCP-1 and related KH domain proteins |
| nr | gi|743771365|ref|XP_010915970.1| | 0 | PREDICTED: KH domain-containing protein At4g18375-like [Elaeis guineensis] |
| Swissprot | tr|P58223|Y4837_ARATH | 6.00E-62 | KH domain-containing protein At4g18375 |
| trEMBL | tr|M0T6T7|M0T6T7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P13890_001} |
| TAIR | AT1G51580 | 2.00E-90 | RNA-binding KH domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 30433 | 54906 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013088
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00013.28 | KH_1 | 47 | 99 | 2.50E-12 |
| PF00013.28 | KH_1 | 182 | 248 | 1.30E-11 |
| PF00013.28 | KH_1 | 332 | 382 | 2.70E-12 |
| PF00013.28 | KH_1 | 418 | 484 | 2.60E-13 |
| PF00013.28 | KH_1 | 613 | 675 | 5.50E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.620 |
| SRR2545915 | Juvenile tuber | 20.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.550 |
| SRR5643514 | five period of Gastrodia elata | 21.020 | |
| SRR5643515 | five period of Gastrodia elata | 20.400 | |
| SRR5643524 | five period of Gastrodia elata | 20.610 | |
| SRR5643525 | five period of Gastrodia elata | 21.360 | |
| SRR5643528 | five period of Gastrodia elata | 27.230 | |
| SRR5643658 | five period of Gastrodia elata | 25.610 | |
| SRR5643659 | five period of Gastrodia elata | 18.120 | |
| SRR5643660 | five period of Gastrodia elata | 19.880 | |
| SRR5643661 | five period of Gastrodia elata | 17.330 | |
| SRR5643662 | five period of Gastrodia elata | 18.840 | |
| SRR5643663 | five period of Gastrodia elata | 16.860 | |
| SRR5643664 | five period of Gastrodia elata | 17.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.610 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.68 |
| Juven | Juvenile tuber | 24.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.04 | |
| Mother_Juven | Mother tuber of Juvenile | 24.72 |