Detail information of GWHGAAEX013089/evm.TU.scaffold_5.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|186681693|ref|YP_001864889.1|2.00E-56hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102]
KOGKOG02720U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats)
nrgi|743785434|ref|XP_010921905.1|0PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Elaeis guineensis]
Swissprottr|O22212|PRP4L_ARATH0U4/U6 small nuclear ribonucleoprotein PRP4-like protein
trEMBLtr|M1AYL0|M1AYL0_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400033081}
TAIRAT2G415000WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000165990472233-
Transcript Sequence

Network for GWHGAAEX013089

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08799.10PRP41121394.40E-11
PF00400.31WD402462710.034
PF00400.31WD402803120.0011
PF00400.31WD403173540.00028
PF00400.31WD403653961.50E-06
PF00400.31WD404044381.10E-08
PF00400.31WD404865236.20E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K12662PRPF4, PRP4 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.170
SRR2545915Juvenile tuber7.220
SRP108465SRR5643513five period of Gastrodia elata13.400
SRR5643514five period of Gastrodia elata17.590
SRR5643515five period of Gastrodia elata15.910
SRR5643524five period of Gastrodia elata19.410
SRR5643525five period of Gastrodia elata17.240
SRR5643528five period of Gastrodia elata19.190
SRR5643658five period of Gastrodia elata17.340
SRR5643659five period of Gastrodia elata14.180
SRR5643660five period of Gastrodia elata13.200
SRR5643661five period of Gastrodia elata15.520
SRR5643662five period of Gastrodia elata14.280
SRR5643663five period of Gastrodia elata13.660
SRR5643664five period of Gastrodia elata13.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.700
SRR6049655Rhizomagastrodiae_C368-T10_good_115.400
SRR6049656Rhizomagastrodiae_C368-T07_good_19.400
SRR6049657Rhizomagastrodiae_C368-T07_good_110.890
SRR6049658Rhizomagastrodiae_C368-T04_good_17.000
SRR6049659Rhizomagastrodiae_C368-T04_good_14.900
SRR6049660Rhizomagastrodiae_C368-T01_good_18.890
SRR6049661Rhizomagastrodiae_C368-T04_good_16.710
SRR6049662Rhizomagastrodiae_C368-T01_good_18.720
SRR6049663Rhizomagastrodiae_C368-T01_good_16.680
SRR6049664Rhizomagastrodiae_C368-T10_good_111.320
SRR6049665Rhizomagastrodiae_C368-T10_good_111.320
SRP279888GastroGastrodia elata tuber 13.54
JuvenJuvenile tuber15.43
Mother_GastroMother tuber of Gastrodia elata 9.30
Mother_JuvenMother tuber of Juvenile 11.92