Detail information of GWHGAAEX013091/evm.TU.scaffold_5.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG11001.00E-44Predicted E3 ubiquitin ligase
nrgi|743880260|ref|XP_010908606.1|3.50E-70PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Elaeis guineensis]
Swissprottr|Q9LDD1|BRG3_ARATH4.00E-45Probable BOI-related E3 ubiquitin-protein ligase 3
trEMBLtr|M0STW9|M0STW9_MUSAM2.00E-66Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P32070_001}
TAIRAT3G129201.00E-44SBP (S-ribonuclease binding protein) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000016232031232579+
Transcript Sequence

Network for GWHGAAEX013091

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.5zf-C3HC4_31341702.60E-10
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms80.370
SRR2545915Juvenile tuber25.870
SRP108465SRR5643513five period of Gastrodia elata146.050
SRR5643514five period of Gastrodia elata289.060
SRR5643515five period of Gastrodia elata190.800
SRR5643524five period of Gastrodia elata272.770
SRR5643525five period of Gastrodia elata559.110
SRR5643528five period of Gastrodia elata390.970
SRR5643658five period of Gastrodia elata543.540
SRR5643659five period of Gastrodia elata100.370
SRR5643660five period of Gastrodia elata111.470
SRR5643661five period of Gastrodia elata76.750
SRR5643662five period of Gastrodia elata153.280
SRR5643663five period of Gastrodia elata121.940
SRR5643664five period of Gastrodia elata143.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_198.180
SRR6049655Rhizomagastrodiae_C368-T10_good_148.020
SRR6049656Rhizomagastrodiae_C368-T07_good_195.620
SRR6049657Rhizomagastrodiae_C368-T07_good_1211.290
SRR6049658Rhizomagastrodiae_C368-T04_good_1245.600
SRR6049659Rhizomagastrodiae_C368-T04_good_1269.830
SRR6049660Rhizomagastrodiae_C368-T01_good_197.620
SRR6049661Rhizomagastrodiae_C368-T04_good_1196.740
SRR6049662Rhizomagastrodiae_C368-T01_good_183.060
SRR6049663Rhizomagastrodiae_C368-T01_good_167.340
SRR6049664Rhizomagastrodiae_C368-T10_good_195.820
SRR6049665Rhizomagastrodiae_C368-T10_good_195.820
SRP279888GastroGastrodia elata tuber 106.90
JuvenJuvenile tuber133.39
Mother_GastroMother tuber of Gastrodia elata 363.34
Mother_JuvenMother tuber of Juvenile 176.17