Detail information of GWHGAAEX013093/evm.TU.scaffold_5.8
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-165 | FOG: PPR repeat |
| nr | gi|573922286|ref|XP_006648728.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405-like, partial [Oryza brachyantha] |
| Swissprot | tr|Q9FG16|PP367_ARATH | 6.00E-166 | Pentatricopeptide repeat-containing protein At5g06540 |
| trEMBL | tr|Q6ZI32|Q6ZI32_ORYSJ | 0 | cDNA clone:J013170L14, full insert sequence {ECO:0000313|EMBL:BAG94432.1} |
| TAIR | AT5G06540 | 2.00E-165 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 295450 | 297622 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013093
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 118 | 166 | 4.00E-07 |
| PF01535.19 | PPR | 197 | 218 | 0.028 |
| PF12854.6 | PPR_1 | 220 | 250 | 2.00E-05 |
| PF13041.5 | PPR_2 | 254 | 300 | 3.40E-09 |
| PF01535.19 | PPR | 332 | 352 | 0.031 |
| PF13041.5 | PPR_2 | 357 | 406 | 6.00E-08 |
| PF01535.19 | PPR | 432 | 457 | 0.34 |
| PF01535.19 | PPR | 502 | 526 | 0.029 |
| PF14432.5 | DYW_deaminase | 534 | 656 | 5.20E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.560 |
| SRR2545915 | Juvenile tuber | 0.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.680 |
| SRR5643514 | five period of Gastrodia elata | 0.430 | |
| SRR5643515 | five period of Gastrodia elata | 0.440 | |
| SRR5643524 | five period of Gastrodia elata | 0.390 | |
| SRR5643525 | five period of Gastrodia elata | 0.450 | |
| SRR5643528 | five period of Gastrodia elata | 0.110 | |
| SRR5643658 | five period of Gastrodia elata | 0.140 | |
| SRR5643659 | five period of Gastrodia elata | 0.320 | |
| SRR5643660 | five period of Gastrodia elata | 0.700 | |
| SRR5643661 | five period of Gastrodia elata | 0.620 | |
| SRR5643662 | five period of Gastrodia elata | 0.350 | |
| SRR5643663 | five period of Gastrodia elata | 0.240 | |
| SRR5643664 | five period of Gastrodia elata | 0.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.280 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.450 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.48 |
| Juven | Juvenile tuber | 0.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.25 | |
| Mother_Juven | Mother tuber of Juvenile | 2.59 |