Detail information of GWHGAAEX013094/evm.TU.scaffold_5.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG14593.00E-07Squalene synthetase
nrgi|700254246|gb|AIU48744.1|5.32E-07phytoene synthase, partial [Trachycarpus fortunei]
Swissprottr|P37273|PSY2_SOLLC6.00E-08Phytoene synthase 2, chloroplastic (Precursor; Fragment)
trEMBLtr|A0A097PL64|A0A097PL64_TRAFO2.00E-07Phytoene synthase {ECO:0000313|EMBL:AIU48744.1} (Fragment)
TAIRAT5G172303.00E-07PHYTOENE SYNTHASE

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000016299537300093+
Transcript Sequence

Network for GWHGAAEX013094

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02291crtB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.300
SRR2545915Juvenile tuber0.420
SRP108465SRR5643513five period of Gastrodia elata0.840
SRR5643514five period of Gastrodia elata0.160
SRR5643515five period of Gastrodia elata0.390
SRR5643524five period of Gastrodia elata0.340
SRR5643525five period of Gastrodia elata0.450
SRR5643528five period of Gastrodia elata1.070
SRR5643658five period of Gastrodia elata0.160
SRR5643659five period of Gastrodia elata0.680
SRR5643660five period of Gastrodia elata1.680
SRR5643661five period of Gastrodia elata0.940
SRR5643662five period of Gastrodia elata2.080
SRR5643663five period of Gastrodia elata0.140
SRR5643664five period of Gastrodia elata2.080
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.730
SRR6049655Rhizomagastrodiae_C368-T10_good_10.480
SRR6049656Rhizomagastrodiae_C368-T07_good_10.350
SRR6049657Rhizomagastrodiae_C368-T07_good_11.590
SRR6049658Rhizomagastrodiae_C368-T04_good_10.590
SRR6049659Rhizomagastrodiae_C368-T04_good_10.460
SRR6049660Rhizomagastrodiae_C368-T01_good_10.870
SRR6049661Rhizomagastrodiae_C368-T04_good_12.350
SRR6049662Rhizomagastrodiae_C368-T01_good_11.600
SRR6049663Rhizomagastrodiae_C368-T01_good_10.470
SRR6049664Rhizomagastrodiae_C368-T10_good_10.570
SRR6049665Rhizomagastrodiae_C368-T10_good_10.570
SRP279888GastroGastrodia elata tuber 0.58
JuvenJuvenile tuber0.44
Mother_GastroMother tuber of Gastrodia elata 1.62
Mother_JuvenMother tuber of Juvenile 0.41