Detail information of GWHGAAEX013095/evm.TU.scaffold_5.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307151117|ref|YP_003886501.1| | 3.00E-99 | phytoene synthase [Cyanothece sp. PCC 7822] |
| KOG | KOG1459 | 3.00E-142 | Squalene synthetase |
| nr | gi|358248704|ref|NP_001239926.1| | 8.96E-148 | uncharacterized protein LOC100776503 [Glycine max] |
| Swissprot | tr|Q9SSU8|PSY_DAUCA | 1.00E-145 | Phytoene synthase, chloroplastic (Precursor) |
| trEMBL | tr|C6T9N7|C6T9N7_SOYBN | 3.00E-148 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G13700.1} |
| TAIR | AT5G17230 | 3.00E-142 | PHYTOENE SYNTHASE |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 301358 | 303861 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013095
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00494.18 | SQS_PSY | 3 | 245 | 5.10E-65 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02291 | crtB | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Carotenoid biosynthesis | map00906 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006696 | Biological Process | ergosterol biosynthetic process |
| GO:0016765 | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| GO:0004310 | Molecular Function | farnesyl-diphosphate farnesyltransferase activity |
| GO:0051996 | Molecular Function | squalene synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.010 |
| SRR2545915 | Juvenile tuber | 0.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.600 |
| SRR5643514 | five period of Gastrodia elata | 0.810 | |
| SRR5643515 | five period of Gastrodia elata | 1.120 | |
| SRR5643524 | five period of Gastrodia elata | 0.300 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.550 | |
| SRR5643659 | five period of Gastrodia elata | 0.290 | |
| SRR5643660 | five period of Gastrodia elata | 0.210 | |
| SRR5643661 | five period of Gastrodia elata | 0.440 | |
| SRR5643662 | five period of Gastrodia elata | 1.510 | |
| SRR5643663 | five period of Gastrodia elata | 0.080 | |
| SRR5643664 | five period of Gastrodia elata | 0.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.890 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.530 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.07 |
| Juven | Juvenile tuber | 0.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.21 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |