Gene detail

Detail information of GWHGAAEX013096/evm.TU.scaffold_5.11

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|147921709\|ref\|YP_001218863.1\|	1.00E-06	UbiE/COQ5 family methyltransferase [Methanocella arvoryzae MRE50]
nr	gi\|743761579\|ref\|XP_010942964.1\|	0	PREDICTED: probable methyltransferase PMT28 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9LN50\|PMTS_ARATH	0	Probable methyltransferase PMT28
trEMBL	tr\|M0T4G4\|M0T4G4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P05660_001}
TAIR	AT1G19430	0	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	305029	323785	-

Transcript Sequence
>GWHTAAEX013096 ATGGCTGGCCCTCGATTGGGACGAAACTTGAAGCCTCGGACTCCACTGAGCTTCCGCTGGAAAGCCTCTCTCGCTGTGTTATTAGGCCTCTCCTTCGTCGTCGTCTGGTCCGTCTTCTCCTCACCCTCGTCCTCGGTTTACTCCCGCCGAGACAGCTTCGACGACATCCAAAGGAACACTTCAGCCACGACTCACTCCATTGATGCTATAACCCCACCTCATATTTCGGCGACGCCGAGTTCAAGCAGGAACGACAGCAAATCTTCACTTCAGAAAGAAGAGAGGAAGCCAGAGGTCGAAACTAGCCCTATTGCCGAGGTAAGTGTGACGGAGGCGGACGCTGGGGAGGAAGAAGAGAAAGAAATTGACGTTGAGGATGGAGTGTATGTGAATACCGAAGTGAAAAATCAGGTGTCAGAAGGCGATATGCCTGGCGAGGAAAATGAAAACAATGACAACATGAAGAAGAGTAAAAAGAAGAATACGGGGCCGTTGTTTGATCCAAAAGCTAGACATGAGTGGAAGCTATGCGGACGTAGAAACAAGCAGAGCTATATGCCTTGCACTGATATGGAAGGAGAGGGAGGTAGAAGGCACCATGAAAGGAGCTGCCCTAATGGAGCTGTGATGTGTCTGGTTCCTCTACCGAAGGGTTATGCGACGTCGGTACCATGGCCGGAGAGTAAATTCAAGGTGCTTTTTGGTAACGTGGCTCATCCGAAGCTCTCTGTTTTTGTGAAGAGGAAGAAGTGGGTAAACATATCTGGGGAGTATCTGATGTTTCATTCTGATGAATTTGAGTTTAATGGGGGAGTTCTGCATTACCTTGATTCTATTGAGGAGATGGTACCTGACCTTGAATGGGGAAAGAACATCCGCATTTTGTTGGACATTGGATGTAATGATGCTAGCTTTGTGGGTACTCTTCTTGAGAAGAATGTTATAACTCTTTCTCTAGGTGCAATGAGTGATCTGGTAGATTTAGCTCAAGTTGTTCTTGAACGTGGCATACCTGCAGTGGTGGGAAATCTGGGCAATCGAAGGCTTCCTTTTCCTAGTGGCGTTTTTGATGCTATTCACTGCAGTGGCTGCAATATACATTGGCATTCTAATGGTGGGCGGCTCCTTCTGGAGATGAATAGGATACTACGTCCTGGAGGATACTTTATTATGTCTTCTGCACATGGAGATGTCGAAAGTGAAGAGGGTATGTCATCATTAACAGCAGCAATTTGGTGGAATGTTTTAGCTTATAAGACTGATGAAATCAGTGAACTAGGTGTCAAAATTTATCAGAGACCTGCATCAAATGAGATATATGACTTGAGAAGAAGAAATGAACCTCCATTCTGCAAGGAAGGGGAAAGCCAAGATTCTGCATGGTACACTCCAATAAAGACCTGCCTTCACAAGCTTCCTACTGCCATAGAAGAGCGAGGTACTGATTGGCCTGAGGAGTGGCCAAAAAGGCTTGAAACTTTCCCTGAGTGGCTTGGCGATATAAAGGAAAAAATAATTGCTGATAATGAGCATTGGAAGGCTATCATTAGCAGATCATATCTCGTTGGGCTGGGTATTGATTGGACAAATATACGTAATGTGATGGATATGAAAGCTATCTATGGAGGATTTGCAGCAGCTCTAGCCTCTCAGAAGGTTTGGGTTCTGAATGTAGTTCCTGTACATGCTCCTAACACTCTTCCTATCATTTTTGAGCGAGGTCTTCTTGGCATTTACCATGATTGGTGTGAATCATTCAGTACTTACCCAAGATCTTATGACCTTCTGCATGCTGATCATTTATTTTCTCGTCTCAAGAACAGGTGTAAACAACCCATTGCCATTCTAGTTGAGATGGATAGAATACTAAGACCTGGCGGTTGGGCCATCGTACGTGATAAATCAGAGATTTTGAGTCATATAGAGAAAATTCTTAAAACATTGCACTGGGATATCATTATGACATTTACCCAGGACACGGAGGGTATTATTTGTGTGAAAAAATCTTTATGGAGGCCAACAGCCTAAAATTTTCCTGGAAAATACTGTTATTTCTCAAAGGTTACACCATTTGACTGCACATCAGCTTTTTCTTTCGCGAAAGAGAATTGTGTCTCTATATATTCATCAATAGCACCTTGGTCTGCCACTTGTCTTGAAGAGAAACATGCTACGGAGTTCAATCTATGATCTGCATGTCCCTTCTAATGTATTAAGAAATGCGTGATGTTGGTTCTACATAGGATATACTTGCATTATTTTGTCATCTTTATTCATTGTTCTTGAAGAGACATGCTACATAGTTCTGACATGCAGAGTGCATTAATTTGCACCCTCTTTAATTGTATCAAGGTGTGCTGTTGGTTGTACATGGGATAATCTCACATATGATTAAACTTTTTTATTCATTGTGTTTAGATTGAGCTCAAGAAATATTCATTAATTTATGATGTTTTTGTTATGCTGGATTTCTAAGTCTTCAATGGTGTCACATGCAATGCTATTTTTTTTCGCTACTTTTTCTTAGTTCTCCTCTTTTTGATTCGGGAGATGTAAAAATAAATTTATGGG

Network for GWHGAAEX013096

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03141.15	Methyltransf_29	185	665	1.30E-175

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008168	Molecular Function	methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.540
SRP064423	SRR2545915	Juvenile tuber	33.580
SRP108465	SRR5643513	five period of Gastrodia elata	28.980
	SRR5643514	five period of Gastrodia elata	29.230
	SRR5643515	five period of Gastrodia elata	30.190
	SRR5643524	five period of Gastrodia elata	27.150
	SRR5643525	five period of Gastrodia elata	46.800
	SRR5643528	five period of Gastrodia elata	32.120
	SRR5643658	five period of Gastrodia elata	49.210
	SRR5643659	five period of Gastrodia elata	24.720
	SRR5643660	five period of Gastrodia elata	27.210
	SRR5643661	five period of Gastrodia elata	22.710
	SRR5643662	five period of Gastrodia elata	22.530
	SRR5643663	five period of Gastrodia elata	25.460
	SRR5643664	five period of Gastrodia elata	23.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	44.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	33.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.310
SRP279888	Gastro	Gastrodia elata tuber	29.77
	Juven	Juvenile tuber	30.71
	Mother_Gastro	Mother tuber of Gastrodia elata	46.17
	Mother_Juven	Mother tuber of Juvenile	36.68