Detail information of GWHGAAEX013097/evm.TU.scaffold_5.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672139539|ref|XP_008793555.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g21300 [Phoenix dactylifera] |
| Swissprot | tr|Q9STE1|PP333_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g21300 |
| trEMBL | tr|A0A0A0LW16|A0A0A0LW16_CUCSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:KGN65963.1} |
| TAIR | AT4G21300 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 326307 | 330565 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013097
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 219 | 265 | 2.50E-10 |
| PF01535.19 | PPR | 294 | 319 | 0.46 |
| PF13041.5 | PPR_2 | 320 | 363 | 2.10E-13 |
| PF01535.19 | PPR | 425 | 453 | 0.00025 |
| PF01535.19 | PPR | 496 | 519 | 0.15 |
| PF13041.5 | PPR_2 | 521 | 569 | 2.70E-10 |
| PF13041.5 | PPR_2 | 622 | 670 | 4.10E-12 |
| PF01535.19 | PPR | 697 | 723 | 0.046 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.340 |
| SRR2545915 | Juvenile tuber | 30.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.500 |
| SRR5643514 | five period of Gastrodia elata | 15.820 | |
| SRR5643515 | five period of Gastrodia elata | 14.840 | |
| SRR5643524 | five period of Gastrodia elata | 16.240 | |
| SRR5643525 | five period of Gastrodia elata | 20.100 | |
| SRR5643528 | five period of Gastrodia elata | 13.980 | |
| SRR5643658 | five period of Gastrodia elata | 23.020 | |
| SRR5643659 | five period of Gastrodia elata | 18.950 | |
| SRR5643660 | five period of Gastrodia elata | 20.510 | |
| SRR5643661 | five period of Gastrodia elata | 20.280 | |
| SRR5643662 | five period of Gastrodia elata | 16.910 | |
| SRR5643663 | five period of Gastrodia elata | 20.000 | |
| SRR5643664 | five period of Gastrodia elata | 18.710 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 24.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 24.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.06 |
| Juven | Juvenile tuber | 23.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.82 | |
| Mother_Juven | Mother tuber of Juvenile | 14.45 |