Detail information of GWHGAAEX013103/evm.TU.scaffold_5.20
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3432 | 2.00E-65 | Vacuolar H+-ATPase V1 sector, subunit F |
| nr | gi|645264968|ref|XP_008237928.1| | 4.78E-67 | PREDICTED: V-type proton ATPase subunit F [Prunus mume] |
| Swissprot | tr|Q9ZQX4|VATF_ARATH | 5.00E-66 | V-type proton ATPase subunit F |
| trEMBL | tr|M5WNU8|M5WNU8_PRUPE | 2.00E-67 | V-type proton ATPase subunit F {ECO:0000256|PIRNR:PIRNR015945} |
| TAIR | AT4G02620 | 2.00E-65 | vacuolar ATPase subunit F family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 414118 | 417252 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013103
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01990.16 | ATP-synt_F | 15 | 111 | 1.50E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:1902600 | Biological Process | hydrogen ion transmembrane transport |
| GO:0034220 | Biological Process | ion transmembrane transport |
| GO:0046961 | Molecular Function | proton-transporting ATPase activity, rotational mechanism |
| GO:0033180 | Cellular Component | proton-transporting V-type ATPase, V1 domain |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.380 |
| SRR2545915 | Juvenile tuber | 20.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.700 |
| SRR5643514 | five period of Gastrodia elata | 10.770 | |
| SRR5643515 | five period of Gastrodia elata | 9.810 | |
| SRR5643524 | five period of Gastrodia elata | 10.890 | |
| SRR5643525 | five period of Gastrodia elata | 9.170 | |
| SRR5643528 | five period of Gastrodia elata | 10.870 | |
| SRR5643658 | five period of Gastrodia elata | 11.030 | |
| SRR5643659 | five period of Gastrodia elata | 10.280 | |
| SRR5643660 | five period of Gastrodia elata | 9.460 | |
| SRR5643661 | five period of Gastrodia elata | 9.870 | |
| SRR5643662 | five period of Gastrodia elata | 10.860 | |
| SRR5643663 | five period of Gastrodia elata | 11.820 | |
| SRR5643664 | five period of Gastrodia elata | 10.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.70 |
| Juven | Juvenile tuber | 6.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.69 | |
| Mother_Juven | Mother tuber of Juvenile | 6.53 |