Gene detail

Detail information of GWHGAAEX013109/evm.TU.scaffold_5.26

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1134	9.00E-172	Uncharacterized conserved protein
nr	gi\|743761685\|ref\|XP_010943516.1\|	0	PREDICTED: CSC1-like protein RXW8 isoform X1 [Elaeis guineensis]
Swissprot	tr\|F4IBD7\|CSCLA_ARATH	0	CSC1-like protein RXW8
trEMBL	tr\|M0STY7\|M0STY7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P32250_001}
TAIR	AT1G69450	9.00E-172	Early-responsive to dehydration stress protein (ERD4)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	490685	506242	-

Transcript Sequence
>GWHTAAEX013109 GTATATTTTATAAAATTATTAATCTTAAATTAATATAAAATAAGAATTCTACAGAATTGCGTATTACCACCATCAACGGAAGGGAGGGAAGTTTAAAGCCGTCTCAGGTCTCTTTGTAGTTCTTGGCCCAGCACTTCACAGAACTCCGCATTTGGTCTCCGATTCAGGAGAGATCACGAAGGCTCTTCCGCGTGTTCTTGATGAATTTGGAGGATCTCAGTGCCTTTGATCGGAGATGGAGTTTGCGGCTCTGCTGACTTCCGCGGGGATAAACATCGGAATCTGCGTGCTGCTGCTGCTGCTGTATTCGATCCTGAGAAAGCAGCCCGGGAATTTCAGCGTTTATTTCGGGAGATGGATGTCGGAGGAGAGGAACCGAAGGATGAATTCGTCTGCTCTTAAGCAATTTGTGCCATCGCCGAGCTGGATGCTGAAAGCATGGCGCTACAAGGAGGAAGAGATACTCAATGTCGCTGGATTGGATGCGGTGGTTTTCATCAGGATTCTTTTGTTCAGTATGCGTATCTTCTCTATAGCAGCAGTTGTTTGCATTTTTGGTGTGCTGCCTTTGAACTATTTTGGACAAGATTCGGAGCATGGTAACATTTCATCTGAACCGTTGGAAGTATTTACGATCGGAAACGTCCAGAATCATTCCCGATGGCTTTGGGTTCACTGCATCGCATTGTATATTATCACAATTTCTGCTTGCGTTCTTTTGTACATGGAATACAAGAGTATTGCAAGGTTGAGGTTGCTACACATCACTCGATCACCTCCAAATCCGAGCCATTTTACAGTTCTTATTCGAGCTATTCCAAAGTCTAACGAGGAAACATTTAGTGATTCTGTCAAAAATTTCTTCACAAGATACCATGCAGCAAGTTATCTATCTCATCAGATAATTTATCGTTCGGGAAAAGTACATAAAATTATGAACAATGCAGAAAAAGCTTACGTTAAGGCAACATATTTAAAGGGTGCTATTGTTAATAAAAATTGCCTACCATTTAGAAGATACACATGTGGCATTTGCGAAAGAGCATCTCTCCAGTTGTGCCCGGATGAATTTGAACTCAGAGCTACTACAAGTGATAGTAACTGTTCAGATTTAAGTGCAAAAGAAAAGGAATGTGGGTCTGCTTTTGTATTTTTCAGAACTCGATATGCTGCTGTGGTTACATCGGAGGTTCTTCAGTCATCAAATCCTATGTACTGGGTTGTTGATCTAGCTCCTGAGCCACAAGATGTTTATTGGTCAAATCTTTGGATTCCGTACAAACAGCTATGGTTTCGCAAAATAGCAGTCCTTGTTGCAAGTATTGTTTTTATGCTTCTGTTTCTCATTCCGGTCACTTTTGTGCAAAGTCTAACTCATTTGGACCAATTGCGGCTGATATTCCCATTTCTAAATGGTTTATTAAATAAGACGTTTGCGAACGAGATAGTGACAGGCTACCTTCCTAGTGTCATTTTACAATTGTTCCTATATATTGTTCCACCAGTGATGCTACTGTTTTCTGCTGTGGAAGGATCCATCTCACATAGTGCTAGGAAAAAGAGCGCTTGTTGGAAAGTGCTGCACTTCACCATCTGGAATGTGTTCTTTGTCAATGTCTTCTCTGGATCTGTCATAAGCCAAATAGAACTCTTTACTAAGCCAAAGGATTTCCCAACCCAGCTTGCAAAAGCAGTACCAAGTCAGGCTACTTTCTTTATCACATATGTTCTAACCTCTGGCTGGGCCAGTTTATCTTCTGAAGTGATGCAGCTCTTTGCCATTCTATGGAACTTAATAAAGAAGCATATATTGAGATGGAAGGATGACCCAACTTGTGTTCCAATATTTCCTTATCACACTGAAATTCCGAGGGTTCTTTTATTTGGGCTTCTTGGTTTCACCTGCTCCATACTAGCACCATTAATATTGCCCTTCTTGCTAGTCTATTTCTTCCTTGGATATGTTGTTTATCGTAATCAAATTATTAATGTTTATTGCTCAAGGTATGAGTCAGGAGGACAGATGTGGCCCGTCGTGCACAATGCCACCATATTCTCTCTGGTGCTATCGCAGATAATAGCTATCGGAGTGTTTGGGTTAAAGGAGTCCCCGACGGCTTCTGCACTCACCATTCCGCTTGTGATTCTAACACTACTTTTCAACGAGTATTGCAGGCAGCGTTTCCATCCCATCTTCAGCAAGTTTTCTGCTCAGGATCTGATCGAGATGGACAGGGAGGACGAGCGATCGGGCAGGCTCGAGGAAATCCACGAGCGGATGCATGCGGCCTACCGCCAGTTCTCTTCGGGCGACGGCTCCCCTCGTTTCCGCATCCCTTGCGAGTCATCAATCACTGGAGAAAGCTCGTCTATCAACCCTTTATATGAGTGTGAAGGCAGCAATCCCAAAGCCCCGACGAATTAGGCGCCTTCTTTCATTCCATGGCTGTTTGTGCAAATAAATACATTTCCCCCCGTCCATCGACTATTCAATATATTCAATATTTCAATTCAACCCTCCCACTATTCATCGAGGGGTTGAAATGTAAATATCGAATTGTTGGGCGGTGAAACAGAAATAGTCGAGGGGAATTTTTTCCCCTTGTGAAATGTGTTAAAATTACAAAGAAAAATGCTTGTGTACCAATCAACTCTAGATAGAAGAATTTTGATTGGTCCATGTCAGAATACTTAGATAGGATGATTTTTTTGTATGGTTTGGGTTGTATGTAAGGGTATAAATAATTGTTTGAAATAGTAAAATTTTGTGAAATAATTCGTTGTTCTTGAAATA

Network for GWHGAAEX013109

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13967.5	RSN1_TM	6	165	7.60E-41
PF14703.5	PHM7_cyt	186	343	7.30E-25
PF02714.14	RSN1_7TM	354	620	3.00E-71

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.090
SRP064423	SRR2545915	Juvenile tuber	4.800
SRP108465	SRR5643513	five period of Gastrodia elata	7.570
	SRR5643514	five period of Gastrodia elata	12.760
	SRR5643515	five period of Gastrodia elata	8.580
	SRR5643524	five period of Gastrodia elata	10.920
	SRR5643525	five period of Gastrodia elata	7.360
	SRR5643528	five period of Gastrodia elata	7.680
	SRR5643658	five period of Gastrodia elata	7.950
	SRR5643659	five period of Gastrodia elata	3.210
	SRR5643660	five period of Gastrodia elata	4.050
	SRR5643661	five period of Gastrodia elata	3.590
	SRR5643662	five period of Gastrodia elata	4.450
	SRR5643663	five period of Gastrodia elata	4.590
	SRR5643664	five period of Gastrodia elata	4.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.920
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.920
SRP279888	Gastro	Gastrodia elata tuber	4.42
	Juven	Juvenile tuber	8.91
	Mother_Gastro	Mother tuber of Gastrodia elata	12.99
	Mother_Juven	Mother tuber of Juvenile	13.92