Detail information of GWHGAAEX013110/evm.TU.scaffold_5.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|327405194|ref|YP_004346032.1| | 2.00E-100 | Squalene monooxygenase [Fluviicola taffensis DSM 16823] |
| KOG | KOG1298 | 0 | Squalene monooxygenase |
| nr | gi|27311241|gb|AAO00687.1| | 0 | Putative Squalene monooxygenase [Oryza sativa Japonica Group] |
| Swissprot | tr|O48651|ERG1_PANGI | 0 | Squalene monooxygenase |
| trEMBL | tr|I1P953|I1P953_ORYGL | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0089900.1} |
| TAIR | AT1G58440 | 0 | FAD/NAD(P)-binding oxidoreductase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 509845 | 522121 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013110
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13450.5 | NAD_binding_8 | 63 | 89 | 2.00E-05 |
| PF08491.9 | SE | 209 | 482 | 8.00E-120 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
| GO:0004506 | Molecular Function | squalene monooxygenase activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.850 |
| SRR2545915 | Juvenile tuber | 11.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.370 |
| SRR5643514 | five period of Gastrodia elata | 41.650 | |
| SRR5643515 | five period of Gastrodia elata | 29.100 | |
| SRR5643524 | five period of Gastrodia elata | 39.650 | |
| SRR5643525 | five period of Gastrodia elata | 42.940 | |
| SRR5643528 | five period of Gastrodia elata | 35.710 | |
| SRR5643658 | five period of Gastrodia elata | 51.230 | |
| SRR5643659 | five period of Gastrodia elata | 15.400 | |
| SRR5643660 | five period of Gastrodia elata | 14.300 | |
| SRR5643661 | five period of Gastrodia elata | 15.110 | |
| SRR5643662 | five period of Gastrodia elata | 19.850 | |
| SRR5643663 | five period of Gastrodia elata | 24.890 | |
| SRR5643664 | five period of Gastrodia elata | 16.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 45.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 38.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.050 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 40.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 55.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 55.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.01 |
| Juven | Juvenile tuber | 16.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.69 | |
| Mother_Juven | Mother tuber of Juvenile | 9.59 |