Detail information of GWHGAAEX013112/evm.TU.scaffold_5.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189183560|ref|YP_001937345.1| | 6.00E-08 | TPR repeat-containing protein 05 [Orientia tsutsugamushi str. Ikeda] |
| KOG | KOG1124 | 5.00E-62 | FOG: TPR repeat |
| nr | gi|743821411|ref|XP_010932026.1| | 4.58E-112 | PREDICTED: inactive TPR repeat-containing thioredoxin TTL3-like [Elaeis guineensis] |
| Swissprot | tr|Q9MAH1|TTL1_ARATH | 7.00E-64 | TPR repeat-containing thioredoxin TTL1 |
| trEMBL | tr|U5CMU2|U5CMU2_AMBTC | 1.00E-107 | Uncharacterized protein {ECO:0000313|EMBL:ERN14466.1} |
| TAIR | AT5G65160 | 5.00E-62 | tetratricopeptide repeat (TPR)-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 560391 | 562733 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013112
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13431.5 | TPR_17 | 102 | 134 | 1.40E-05 |
| PF00085.19 | Thioredoxin | 205 | 298 | 4.10E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045454 | Biological Process | cell redox homeostasis |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.080 |
| SRR2545915 | Juvenile tuber | 11.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.020 |
| SRR5643514 | five period of Gastrodia elata | 8.800 | |
| SRR5643515 | five period of Gastrodia elata | 8.220 | |
| SRR5643524 | five period of Gastrodia elata | 8.510 | |
| SRR5643525 | five period of Gastrodia elata | 4.390 | |
| SRR5643528 | five period of Gastrodia elata | 8.420 | |
| SRR5643658 | five period of Gastrodia elata | 6.800 | |
| SRR5643659 | five period of Gastrodia elata | 4.490 | |
| SRR5643660 | five period of Gastrodia elata | 4.280 | |
| SRR5643661 | five period of Gastrodia elata | 4.080 | |
| SRR5643662 | five period of Gastrodia elata | 5.110 | |
| SRR5643663 | five period of Gastrodia elata | 5.530 | |
| SRR5643664 | five period of Gastrodia elata | 5.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.350 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.83 |
| Juven | Juvenile tuber | 6.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.89 | |
| Mother_Juven | Mother tuber of Juvenile | 13.79 |