Gene detail

Database	Orthologs	E value	Annotation
COG	gi\|146328793\|ref\|YP_001209360.1\|	4.00E-12	RNA recognition motif-containing protein [Dichelobacter nodosus VCS1703A]
KOG	KOG4205	1.00E-55	RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1
nr	gi\|743761711\|ref\|XP_010943641.1\|	3.36E-76	PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Elaeis guineensis]
Swissprot	tr\|Q9C652\|RBP1_ARATH	1.00E-50	RNA-binding protein 1
trEMBL	tr\|M1A1H0\|M1A1H0_SOLTU	3.00E-63	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400012586}
trEMBL	tr\|M1A1H0\|M1A1H0_SOLTU	3.00E-09	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400012586}
TAIR	AT4G26650	1.00E-55	RNA-binding (RRM/RBD/RNP motifs) family protein

Scaffold	Start	End	Strand
GWHAAEX00000016	572277	581577	+

Transcript Sequence
>GWHTAAEX013114 ATGTCTGCCACCCGATCATCCGCCGTTCAATTTCACTTTCTTGATGCTCAGTTTCTTTCACTGGAGAAAAACCCTCTTTTCTTGTTCTTCGATACCTGCCACAAAACCCTCGCCGCCTTCTCTGACTCGCAGATTTTAATTCTGGGCAGCATTAGGATTTCAAGAGGAAATATGAACGCCTCTTCGTCGTCTTCGTCGCAGTCATTAGCTTCGAAGGTTTTTGTTGGGGGAATCACGAAGGAGTTGGAGGAAGATGCGCTGAAAGAGTATTTTCGCAAGTACGGGGATGTTAAGGAGGTCGTGGTGGTTAAGGAGAGGGCTACGGGAAATGTTAAGGGCTACGGATTTGTTGAATTTGTTGACGCTGAAGCTGCTGCGAGGTCGATCAATGACGAGGGGCAACACATGGTTGGGGATAGATTGCTTGAAGTCAAGCGAGCTAGACCAAGATTAGAAGAGCGCAGGCATTATCAACTTGTTTGTCGCCAACATTCAGATCATAGTATTACTAACTGCACTAATAATGATGTTAACAATTCTACTGCAAGAAAGATTTTTGTTGGCGGATTGCCATCTAGTATTACTGAAGATGAGTTTAGGAGCTACTTCAAAAAATTTGGTTCTGTGAATGATGTGGTTATTATGATTGATAGTGAAACGAACCGGCCAAGAGGCTTTGGCTTTATAACCTTTGATTCTGAAGAGGCTGCACTAAATGCAATGCAGAAGAGGTTCCATGAGCTGAATAAAAAAACTGTAGAGGTTAAGAGGGCAGTTCCCAAGGATAATCCCCAAAATACTGGCAATATTTATAACAGAATGAATAGTAATTCTAACTCAGCTTTTGAGAGGCTAAATTCGTATGCTAACTATCATCCTTGGGGGTATCCATTTTATGGCCCTGAATATGGATATTATTATGATTTTGCAGCACCACTTGTTCCTTATTATGGAGATTATGCCTACGATGGCTATAGTGCAATTGATTACGAGAGTCCATATGCAAACTCAAGGTTCACATGGAATGAGCATAGCATGATGTCTTTGAAACAAATTTCAGTTCCTTATCGTGATGCTTCTAGTTTCTACCCTGGGTATGCAAATTCTGAACCCAACGGATATATGAAGATGGCTAGAAGAGGGTTTCATGGAGCTGTGTGGCTTGGCAAGGGAAAGTTAAATCAAACCAGCACTCATTTACAGAAGACAGACCATGCAGATCCGACCTCTTTAGAGCTTGAGAAACTGAAGGTTGACGATGCTAAATAAAAACTTTCTGGTCTTACAGGAAATCAACATATCATCATTCCGCACTGAACTTTATATATATATATATATATA

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	73	141	3.80E-16
PF00076.21	RRM_1	185	252	2.10E-19

Protein Sequence

Gene family	subfamily
--	--

KO	Enzyme	pathway	mapID
K14411	MSI	mRNA surveillance pathway	map03015

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.920
SRP064423	SRR2545915	Juvenile tuber	15.350
SRP108465	SRR5643513	five period of Gastrodia elata	9.510
	SRR5643514	five period of Gastrodia elata	8.000
	SRR5643515	five period of Gastrodia elata	11.030
	SRR5643524	five period of Gastrodia elata	11.560
	SRR5643525	five period of Gastrodia elata	8.400
	SRR5643528	five period of Gastrodia elata	18.200
	SRR5643658	five period of Gastrodia elata	7.950
	SRR5643659	five period of Gastrodia elata	11.150
	SRR5643660	five period of Gastrodia elata	9.530
	SRR5643661	five period of Gastrodia elata	11.860
	SRR5643662	five period of Gastrodia elata	8.810
	SRR5643663	five period of Gastrodia elata	7.680
	SRR5643664	five period of Gastrodia elata	4.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.060
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.480
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.200
SRP279888	Gastro	Gastrodia elata tuber	6.23
	Juven	Juvenile tuber	5.11
	Mother_Gastro	Mother tuber of Gastrodia elata	12.38
	Mother_Juven	Mother tuber of Juvenile	6.66