Detail information of GWHGAAEX013118/evm.TU.scaffold_5.35


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|17227780|ref|NP_484328.1|9.00E-10hypothetical protein all0284 [Nostoc sp. PCC 7120]
KOGKOG17870Kinase A-anchor protein Neurobeachin and related BEACH and WD40 repeat proteins
nrgi|672140761|ref|XP_008794193.1|0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103710306 [Phoenix dactylifera]
trEMBLtr|A0A061DUX8|A0A061DUX8_THECC0Beige-related and WD-40 repeat-containing protein isoform 1 {ECO:0000313|EMBL:EOX96162.1}
TAIRAT2G455400WD-40 repeat family protein / beige-related

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000016639053752086+
Transcript Sequence

Network for GWHGAAEX013118

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15787.4DUF47046319132.50E-45
PF14844.5PH_BEACH207421705.30E-23
PF02138.17Beach220024751.50E-108
PF00400.31WD40262926603.60E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.210
SRR2545915Juvenile tuber9.840
SRP108465SRR5643513five period of Gastrodia elata6.520
SRR5643514five period of Gastrodia elata6.440
SRR5643515five period of Gastrodia elata7.120
SRR5643524five period of Gastrodia elata6.370
SRR5643525five period of Gastrodia elata6.930
SRR5643528five period of Gastrodia elata5.240
SRR5643658five period of Gastrodia elata5.380
SRR5643659five period of Gastrodia elata9.120
SRR5643660five period of Gastrodia elata9.340
SRR5643661five period of Gastrodia elata9.050
SRR5643662five period of Gastrodia elata8.680
SRR5643663five period of Gastrodia elata10.530
SRR5643664five period of Gastrodia elata9.170
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.800
SRR6049655Rhizomagastrodiae_C368-T10_good_16.040
SRR6049656Rhizomagastrodiae_C368-T07_good_16.830
SRR6049657Rhizomagastrodiae_C368-T07_good_16.160
SRR6049658Rhizomagastrodiae_C368-T04_good_16.870
SRR6049659Rhizomagastrodiae_C368-T04_good_15.520
SRR6049660Rhizomagastrodiae_C368-T01_good_16.110
SRR6049661Rhizomagastrodiae_C368-T04_good_17.370
SRR6049662Rhizomagastrodiae_C368-T01_good_16.630
SRR6049663Rhizomagastrodiae_C368-T01_good_16.550
SRR6049664Rhizomagastrodiae_C368-T10_good_16.220
SRR6049665Rhizomagastrodiae_C368-T10_good_16.220
SRP279888GastroGastrodia elata tuber 12.42
JuvenJuvenile tuber12.15
Mother_GastroMother tuber of Gastrodia elata 8.08
Mother_JuvenMother tuber of Juvenile 10.94