Detail information of GWHGAAEX013121/evm.TU.scaffold_5.38


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08239.00E-72Predicted E3 ubiquitin ligase
nrgi|743761399|ref|XP_010941973.1|6.70E-122PREDICTED: E3 ubiquitin-protein ligase RNF5-like [Elaeis guineensis]
Swissprottr|Q6R567|RMA1_CAPAN2.00E-28E3 ubiquitin-protein ligase RMA1H1
trEMBLtr|M0SSS3|M0SSS3_MUSAM6.00E-118Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P28110_001}
TAIRAT1G193109.00E-72RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000016774328775011-
Transcript Sequence

Network for GWHGAAEX013121

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.5zf-C3HC4_332791.90E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
K10666RNF5 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms151.700
SRR2545915Juvenile tuber98.740
SRP108465SRR5643513five period of Gastrodia elata104.990
SRR5643514five period of Gastrodia elata88.820
SRR5643515five period of Gastrodia elata109.990
SRR5643524five period of Gastrodia elata94.850
SRR5643525five period of Gastrodia elata192.960
SRR5643528five period of Gastrodia elata146.380
SRR5643658five period of Gastrodia elata207.630
SRR5643659five period of Gastrodia elata102.880
SRR5643660five period of Gastrodia elata117.770
SRR5643661five period of Gastrodia elata113.340
SRR5643662five period of Gastrodia elata131.230
SRR5643663five period of Gastrodia elata117.760
SRR5643664five period of Gastrodia elata133.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1185.560
SRR6049655Rhizomagastrodiae_C368-T10_good_1111.460
SRR6049656Rhizomagastrodiae_C368-T07_good_1163.240
SRR6049657Rhizomagastrodiae_C368-T07_good_1254.180
SRR6049658Rhizomagastrodiae_C368-T04_good_1279.820
SRR6049659Rhizomagastrodiae_C368-T04_good_1286.670
SRR6049660Rhizomagastrodiae_C368-T01_good_1213.020
SRR6049661Rhizomagastrodiae_C368-T04_good_1245.680
SRR6049662Rhizomagastrodiae_C368-T01_good_1111.090
SRR6049663Rhizomagastrodiae_C368-T01_good_1161.820
SRR6049664Rhizomagastrodiae_C368-T10_good_1121.910
SRR6049665Rhizomagastrodiae_C368-T10_good_1121.910
SRP279888GastroGastrodia elata tuber 172.80
JuvenJuvenile tuber241.90
Mother_GastroMother tuber of Gastrodia elata 241.65
Mother_JuvenMother tuber of Juvenile 261.47