Detail information of GWHGAAEX013123/evm.TU.scaffold_5.40


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08233.00E-30Predicted E3 ubiquitin ligase
nrgi|743856729|ref|XP_010941935.1|1.04E-57PREDICTED: E3 ubiquitin-protein ligase RNF5 [Elaeis guineensis]
Swissprottr|Q6R567|RMA1_CAPAN5.00E-18E3 ubiquitin-protein ligase RMA1H1
trEMBLtr|M0SSS3|M0SSS3_MUSAM3.00E-56Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P28110_001}
TAIRAT2G237803.00E-30RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000016781545782178-
Transcript Sequence

Network for GWHGAAEX013123

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00097.24zf-C3HC433731.90E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
K10666RNF5 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.460
SRR2545915Juvenile tuber2.820
SRP108465SRR5643513five period of Gastrodia elata0.720
SRR5643514five period of Gastrodia elata1.450
SRR5643515five period of Gastrodia elata1.330
SRR5643524five period of Gastrodia elata0.580
SRR5643525five period of Gastrodia elata1.560
SRR5643528five period of Gastrodia elata1.220
SRR5643658five period of Gastrodia elata0.730
SRR5643659five period of Gastrodia elata0.960
SRR5643660five period of Gastrodia elata1.700
SRR5643661five period of Gastrodia elata1.070
SRR5643662five period of Gastrodia elata1.510
SRR5643663five period of Gastrodia elata1.780
SRR5643664five period of Gastrodia elata0.790
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.250
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_10.620
SRR6049657Rhizomagastrodiae_C368-T07_good_10.740
SRR6049658Rhizomagastrodiae_C368-T04_good_10.920
SRR6049659Rhizomagastrodiae_C368-T04_good_10.810
SRR6049660Rhizomagastrodiae_C368-T01_good_11.010
SRR6049661Rhizomagastrodiae_C368-T04_good_12.490
SRR6049662Rhizomagastrodiae_C368-T01_good_12.060
SRR6049663Rhizomagastrodiae_C368-T01_good_10.370
SRR6049664Rhizomagastrodiae_C368-T10_good_11.010
SRR6049665Rhizomagastrodiae_C368-T10_good_11.010
SRP279888GastroGastrodia elata tuber 1.23
JuvenJuvenile tuber0.45
Mother_GastroMother tuber of Gastrodia elata 0.61
Mother_JuvenMother tuber of Juvenile 0.97