Detail information of GWHGAAEX013129/evm.TU.scaffold_5.46
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-116 | FOG: PPR repeat |
| nr | gi|672126568|ref|XP_008786740.1| | 1.40E-151 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g61370, mitochondrial, partial [Phoenix dactylifera] |
| Swissprot | tr|Q9FLJ6|PP439_ARATH | 3.00E-117 | Pentatricopeptide repeat-containing protein At5g61370, mitochondrial (Precursor) |
| trEMBL | tr|K4A6Q5|K4A6Q5_SETIT | 2.00E-123 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si034560m} |
| TAIR | AT5G61370 | 1.00E-116 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 846817 | 848289 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013129
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 167 | 187 | 0.5 |
| PF13812.5 | PPR_3 | 228 | 269 | 7.40E-05 |
| PF01535.19 | PPR | 305 | 331 | 0.001 |
| PF01535.19 | PPR | 412 | 439 | 0.34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.200 |
| SRR2545915 | Juvenile tuber | 5.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.390 |
| SRR5643514 | five period of Gastrodia elata | 5.610 | |
| SRR5643515 | five period of Gastrodia elata | 5.580 | |
| SRR5643524 | five period of Gastrodia elata | 4.830 | |
| SRR5643525 | five period of Gastrodia elata | 5.420 | |
| SRR5643528 | five period of Gastrodia elata | 3.670 | |
| SRR5643658 | five period of Gastrodia elata | 2.940 | |
| SRR5643659 | five period of Gastrodia elata | 4.490 | |
| SRR5643660 | five period of Gastrodia elata | 2.790 | |
| SRR5643661 | five period of Gastrodia elata | 4.160 | |
| SRR5643662 | five period of Gastrodia elata | 4.680 | |
| SRR5643663 | five period of Gastrodia elata | 4.500 | |
| SRR5643664 | five period of Gastrodia elata | 9.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.110 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.850 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.41 |
| Juven | Juvenile tuber | 2.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.35 | |
| Mother_Juven | Mother tuber of Juvenile | 2.92 |