Detail information of GWHGAAEX013131/evm.TU.scaffold_5.48


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG13651.00E-60RNA-binding protein Fusilli, contains RRM domain
nrgi|672122966|ref|XP_008784832.1|3.62E-93PREDICTED: heterogeneous nuclear ribonucleoprotein F [Phoenix dactylifera]
trEMBLtr|F6GU40|F6GU40_VITVI2.00E-83Putative uncharacterized protein {ECO:0000313|EMBL:CCB43704.1}
TAIRAT3G208901.00E-60RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000016855814856398-
Transcript Sequence

Network for GWHGAAEX013131

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms136.230
SRR2545915Juvenile tuber112.520
SRP108465SRR5643513five period of Gastrodia elata46.550
SRR5643514five period of Gastrodia elata32.140
SRR5643515five period of Gastrodia elata31.080
SRR5643524five period of Gastrodia elata26.770
SRR5643525five period of Gastrodia elata55.360
SRR5643528five period of Gastrodia elata37.900
SRR5643658five period of Gastrodia elata48.160
SRR5643659five period of Gastrodia elata151.610
SRR5643660five period of Gastrodia elata198.920
SRR5643661five period of Gastrodia elata138.760
SRR5643662five period of Gastrodia elata136.560
SRR5643663five period of Gastrodia elata163.960
SRR5643664five period of Gastrodia elata169.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_145.570
SRR6049655Rhizomagastrodiae_C368-T10_good_132.530
SRR6049656Rhizomagastrodiae_C368-T07_good_150.050
SRR6049657Rhizomagastrodiae_C368-T07_good_166.530
SRR6049658Rhizomagastrodiae_C368-T04_good_144.800
SRR6049659Rhizomagastrodiae_C368-T04_good_149.080
SRR6049660Rhizomagastrodiae_C368-T01_good_151.100
SRR6049661Rhizomagastrodiae_C368-T04_good_146.600
SRR6049662Rhizomagastrodiae_C368-T01_good_129.660
SRR6049663Rhizomagastrodiae_C368-T01_good_135.620
SRR6049664Rhizomagastrodiae_C368-T10_good_133.790
SRR6049665Rhizomagastrodiae_C368-T10_good_133.790
SRP279888GastroGastrodia elata tuber 221.49
JuvenJuvenile tuber88.81
Mother_GastroMother tuber of Gastrodia elata 43.25
Mother_JuvenMother tuber of Juvenile 39.44