Detail information of GWHGAAEX013133/evm.TU.scaffold_5.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15669118|ref|NP_247923.1| | 3.00E-23 | protoporphyrinogen oxidase HemK [Methanocaldococcus jannaschii DSM 2661] |
| KOG | KOG3191 | 2.00E-103 | Predicted N6-DNA-methyltransferase |
| nr | gi|449438254|ref|XP_004136904.1| | 1.47E-114 | PREDICTED: hemK methyltransferase family member 2-like [Cucumis sativus] |
| trEMBL | tr|A0A0A0K7J9|A0A0A0K7J9_CUCSA | 5.00E-115 | Uncharacterized protein {ECO:0000313|EMBL:KGN43791.1} |
| TAIR | AT3G13440 | 2.00E-103 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 915073 | 916021 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013133
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05175.13 | MTS | 46 | 127 | 9.70E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0032259 | Biological Process | methylation |
| GO:0008168 | Molecular Function | methyltransferase activity |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.170 |
| SRR2545915 | Juvenile tuber | 7.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.730 |
| SRR5643514 | five period of Gastrodia elata | 11.420 | |
| SRR5643515 | five period of Gastrodia elata | 11.760 | |
| SRR5643524 | five period of Gastrodia elata | 11.530 | |
| SRR5643525 | five period of Gastrodia elata | 10.430 | |
| SRR5643528 | five period of Gastrodia elata | 7.990 | |
| SRR5643658 | five period of Gastrodia elata | 11.380 | |
| SRR5643659 | five period of Gastrodia elata | 16.890 | |
| SRR5643660 | five period of Gastrodia elata | 17.760 | |
| SRR5643661 | five period of Gastrodia elata | 20.750 | |
| SRR5643662 | five period of Gastrodia elata | 20.060 | |
| SRR5643663 | five period of Gastrodia elata | 18.180 | |
| SRR5643664 | five period of Gastrodia elata | 21.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.04 |
| Juven | Juvenile tuber | 26.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.19 | |
| Mother_Juven | Mother tuber of Juvenile | 15.64 |