Gene detail

Detail information of GWHGAAEX013143/evm.TU.scaffold_5.62

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3970	1.00E-27	Predicted E3 ubiquitin ligase
nr	gi\|743846834\|ref\|XP_010938944.1\|	0	PREDICTED: uncharacterized protein LOC105057920 [Elaeis guineensis]
trEMBL	tr\|M0SMV8\|M0SMV8_MUSAM	2.00E-180	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P10910_001}
TAIR	CE21934	1.00E-27	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	1004627	1043108	+

Transcript Sequence
>GWHTAAEX013143 AAGTGACCCAAATGCAAGTAACGAAGTCGAGCTCGAACCCACTCCCAAATTTGACAAAATCTCTGCACTTTGCTGGCTCACCGTTTTCAGATGCTTTTCCCCCTCACGTCGATTTCTTACACAAGCTTTCTTCTGATCTTCCCGATTTGATGCGTCATGGTGGTTTGCAAATGTCGTAAGGCAACTCGGATATATTGCTTTGTGCACAAGGTTCCTGTATGCGGGGAATGCATTTGTTTTCCAGAGCACCAACTATGTGTGGTTCAAAAATACTCGGAGTGGGTAGTTAATGGAGACTATGATTGGCCTCCTACTTGTCCGCGGTGTCAAGCAGAGCTTGTAGCTGGAAGTGAAACAACAAGACTTGGTTGCTTACATGTTATGCACACCAATTGTTTTGTGTTACATATTCAAAGTTTTCCACCCCAAACTGCACCAGCAGGATATGTCTGCCCTTCTTGCGTATCTCCTATATGGCCACCTAAAGACATTAAAGATACCGGATCTTGTTTGCACACTAAACTGAAGGAAGCAATTATTCAGAGTGGTCAGGAGAAAAATGTATTTGGAAATTATCTAGTGTCATTACCTCCAGCGGAGCCCCGAGCTGCACCTCCTGCTTTTGCTTCAGATCCTCTTTTTCACATATCTGCTGCTGAAGATGGAGAGAAGAGCAGTGTAAATTCATTTGATTTTGTCAAAGATATAAATATAACCTCTTCTTTAGGTGGAATCTCATCTTTGAAGAATTCTGAAGTAGAAATTGTGGAAATAGAAGGCCCTAGCTCAGTAGAAAATCATTTCATGTCGGATCAAGATCCCAATTTTAGCAAGATTGCTACAACTCCTGGTGCCACTACAAGAAAGGGAAGTCACCATGTTGATCGGCAAAACTCTGAAACTTCTTATTATGCAGATGACGAAGATGGGACACATAGAAAGTATACTCGAAGGGGACCTTTTGGTCACAAATTTCTGAGAATGTTGCTTCCCTTCTGGTCTAATGCACTGCCAACTCTACCTGTGACTGCCCCCCCTCGCAAAGAGAGATCTCAAGTAGATGATGCTCAAGAAGGACGTGCACGCCAGCAAAGAACTTCAAGAATGGATCCAAGGAAAATTTTACTTGTTATGGCAATCATGGCATGCATGACAACTATGGGAATTCTGTATTATCGCTTGGTTCAAAGTAGCCTCGGGGTTGACATTCCTGAAGATTTACCACAATGAAGAGCGAGGTTTGGTTGAGCTTATTCTTTTGTAGAGGTACAATTTTCTTAAGCCTTTCCTGCAGCAGAACTTTCTCTTGAAATATATTTTTATTCTGATGCATTTTTAGAAAATGCAGTAGAGAGAATTTGTGTGGCTTTGTTGGACAGGTGCATATTTAATGAGCATTTACTTTTTAGTTATATGAATTCTCTTAACTTTCAAGCTTATACTTTGTCTGCTCAACGAGCTCTTTGCAAAGATTTCAAAAGATCAACAATAATTTAAGTAGCAAAATTTATGACATTTCTAATGAAATCTGATGCCAATATGGAATTTTTCAGCAAATGAATTTTATTGTGTGAC

Network for GWHGAAEX013143

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	36.600
SRP064423	SRR2545915	Juvenile tuber	36.340
SRP108465	SRR5643513	five period of Gastrodia elata	41.830
	SRR5643514	five period of Gastrodia elata	43.770
	SRR5643515	five period of Gastrodia elata	42.660
	SRR5643524	five period of Gastrodia elata	44.650
	SRR5643525	five period of Gastrodia elata	51.660
	SRR5643528	five period of Gastrodia elata	54.950
	SRR5643658	five period of Gastrodia elata	46.760
	SRR5643659	five period of Gastrodia elata	41.370
	SRR5643660	five period of Gastrodia elata	40.700
	SRR5643661	five period of Gastrodia elata	32.350
	SRR5643662	five period of Gastrodia elata	36.940
	SRR5643663	five period of Gastrodia elata	38.890
	SRR5643664	five period of Gastrodia elata	31.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	33.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	57.380
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	25.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.990
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.520
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	34.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.970
SRP279888	Gastro	Gastrodia elata tuber	37.59
	Juven	Juvenile tuber	55.95
	Mother_Gastro	Mother tuber of Gastrodia elata	46.33
	Mother_Juven	Mother tuber of Juvenile	61.20