Gene detail

Detail information of GWHGAAEX013144/evm.TU.scaffold_5.63

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695014062\|ref\|XP_009393839.1\|	2.49E-64	PREDICTED: transcription factor bHLH85-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q7XHI9\|BH084_ARATH	3.00E-52	Transcription factor bHLH84
trEMBL	tr\|M0SFV3\|M0SFV3_MUSAM	2.00E-67	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P18870_001}
TAIR	AT4G33880	7.00E-49	ROOT HAIR DEFECTIVE 6-LIKE 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	1048699	1052428	+

Transcript Sequence
>GWHTAAEX013144 CTTTTCATAAATCTAAGGGAGTCCAAGATTTTTATAAGGATTTCCAACCTTCAATTATTAAATCAGCTTCTAATGAGTTGTATCAAAGCTTTAATGAAGTCATTTTCTTATTGCATTATAAGTTAAGGGGATGTTCATATAAATAGCTCTTCAAATTTGCCACATGAAATGACAAAGTTATATATAATCTTGGCACGACTACTTCGTCACGATATTCGTTCTCCTGTGGTTCTTAAGTTTGGATTGGCGCATGAAGGCAGAGGCGAGCCTGAGCTCGTTCGGCTCCTTAATGGCGGACGAGGAATCCGAGCTCTTGGCGCAGTTCTTCAGCAATCATCCTTTCTCCAACGGGCATGAACACGAAGAACCAAGCATGGTGATGCAATCTTTGTTTTGGTCTGATCATGGGATTGATCCCTATTACGTATCTCAAGATATAAGTACAAATATGTATTATTGTCCTATGGAGAATGGAAGCAAAACTTCAGAGCAAGTTTACTTTAACAATATGGAATCAAATATCATTTCTACAATAGGAATGATATATGATCAAGAACCAATGCTATTGAATATGGTAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGATGGTGATGATGGGAAAATCAATACCACATCAATGACGATCAATCGAAAAAGTCATCCCGAATGCAAGAGAAAGATTCAAACTTGTGATACCATTGTCGATTATAAGAAGAAGGATCATAATTTTTCACAGGCTGGAAAGAGCAGTGGTAAGAGTTCAAAAAGTAAGAAGACAGAGAAGAAAGTTGCTGCTTCAGTTTTACAAAGCCCCTGTTGCAATAGCTCTGAAAACGAGGCCAGCATTTCTCAAGAACTGAATAGGGAATTCAACCCTATTTCAAGCTTGAGCCTGAGCCCAAGCCCGAGCCCGAACCTGAGGCGGAACCCGAACCCGAAGGGCCCCAATGGGAAGAAGAGAGCCGGCAGAGGATCAGCTACCGACCCACAGAGTCTCTATGCAAGGAAAAGGAGGGAAAGAATCAACGAAAGACTCAAGATATTGCAGAATTTAGTTCCGAATGGAACCAAAGTAGACATTAGCACAATGCTGGAAGAAGCAGTGCAGTACGTAAAGTTCTTGCAGCTTCAAATTAAGCTTTTGAGCTCAGATGACTTCTGGATGTATGCACCAATAGCTTACAATGGGATGAACATTGGAATTGATCTAAAGAGCTCTCCATAACAAGATGCAAAGTATGGCTTTGTTTCTTCAGAGCATTTGGAAGACAAATTCGCAAGCAGCATACATAACAATATCAATATACATACATATACATATATACATAAAACATATATACACTATGTAACTGCATAGCTAAGCTGTAATAAGTTTATACTCTAATTAATAAGCCCATGAGAAAATAAGATCCATGAGGAATGCATTATGATTAATTGTCATTAAGAAATGAAGTTCTAATAATAATCTTTGCAGAGAATTGGGAAACTAATATGTACATATAAATTAAGCAATGAAGTTGGTTCATTTGTTTAATCAATCAAACTGATATTTTGTTTTCATTCTTGCAAATTTTTATACAGTAATTATTGTCTTTTGGTAATCCAAAAATGATAACCTACACAATCAAATGACTATCATCTCTCTGTATCTGAGAGAGAGAGAGAGATGCCTTGAAATAAGCTTTTATGCTCTTCTTAAGAGTTGTTGGCATGTTGCGGCTTTGTTTGATGAAAATCATATTTTGAAATAGATCTATGGTATGGGTTTACTCAATCAAGGCTATCTCATTAGCTTTCATCAATTTTTGTTTGTAAGCAATCATGCATATGTAATATATAATTTCATGATGGTTTAACTTAAGCATATCAATAATATAGATCTTGGCCTATTCCAATTTGATTTAAACCCCCATTAGATAGACTCTCATTTTTTATGACTAGAAGAGCTAAAGAAAGCTTATGAGTGCATTCGCAATTGTTACGGATTAATTGGAGGCGAAGCGAACGCAATATGAGCCCAAAACGAGCTTCGGAACAAAAGCTGATTATTG

Network for GWHGAAEX013144

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.25	HLH	253	293	4.10E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	Molecular Function	protein dimerization activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.450
SRP064423	SRR2545915	Juvenile tuber	1.260
SRP108465	SRR5643513	five period of Gastrodia elata	3.100
	SRR5643514	five period of Gastrodia elata	3.560
	SRR5643515	five period of Gastrodia elata	2.070
	SRR5643524	five period of Gastrodia elata	2.510
	SRR5643525	five period of Gastrodia elata	4.650
	SRR5643528	five period of Gastrodia elata	5.440
	SRR5643658	five period of Gastrodia elata	8.360
	SRR5643659	five period of Gastrodia elata	6.860
	SRR5643660	five period of Gastrodia elata	3.400
	SRR5643661	five period of Gastrodia elata	5.450
	SRR5643662	five period of Gastrodia elata	3.360
	SRR5643663	five period of Gastrodia elata	7.320
	SRR5643664	five period of Gastrodia elata	3.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.980
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.540
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.330
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.670
SRP279888	Gastro	Gastrodia elata tuber	5.90
	Juven	Juvenile tuber	0.70
	Mother_Gastro	Mother tuber of Gastrodia elata	4.59
	Mother_Juven	Mother tuber of Juvenile	2.00