Detail information of GWHGAAEX013145/evm.TU.scaffold_5.64
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|162446982|ref|YP_001620114.1| | 4.00E-38 | 30S ribosomal protein S13 [Acholeplasma laidlawii PG-8A] |
| KOG | KOG3311 | 2.00E-55 | Ribosomal protein S18 |
| nr | gi|672162457|ref|XP_008801045.1| | 9.54E-87 | PREDICTED: 30S ribosomal protein S13, chloroplastic [Phoenix dactylifera] |
| Swissprot | tr|P42732|RR13_ARATH | 8.00E-62 | 30S ribosomal protein S13, chloroplastic (Precursor) |
| trEMBL | tr|E0CRC2|E0CRC2_VITVI | 5.00E-75 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI19076.3} |
| TAIR | AT5G14320 | 2.00E-55 | Ribosomal protein S13/S18 family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 1057855 | 1059563 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013145
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00416.21 | Ribosomal_S13 | 53 | 157 | 1.10E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02952 | RP-S13, rpsM | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.530 |
| SRR2545915 | Juvenile tuber | 30.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.130 |
| SRR5643514 | five period of Gastrodia elata | 25.550 | |
| SRR5643515 | five period of Gastrodia elata | 23.920 | |
| SRR5643524 | five period of Gastrodia elata | 24.910 | |
| SRR5643525 | five period of Gastrodia elata | 12.310 | |
| SRR5643528 | five period of Gastrodia elata | 9.390 | |
| SRR5643658 | five period of Gastrodia elata | 12.440 | |
| SRR5643659 | five period of Gastrodia elata | 24.380 | |
| SRR5643660 | five period of Gastrodia elata | 23.980 | |
| SRR5643661 | five period of Gastrodia elata | 29.230 | |
| SRR5643662 | five period of Gastrodia elata | 28.930 | |
| SRR5643663 | five period of Gastrodia elata | 25.100 | |
| SRR5643664 | five period of Gastrodia elata | 25.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 35.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.720 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.280 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.64 |
| Juven | Juvenile tuber | 21.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.90 | |
| Mother_Juven | Mother tuber of Juvenile | 13.40 |